View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8364_low_11 (Length: 357)
Name: NF8364_low_11
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8364_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 39370538 - 39370763
Alignment:
| Q |
18 |
ctacttttgtttcttccaactattctcatgaatcataacaaatcacatctacagaatgaactctcttcaacttttctgtcttctcctatagacttcgcaa |
117 |
Q |
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| T |
39370538 |
ctacttttgtttcttccaactattctcatgaatcataacaaatcacatctacagaatgaactctcttcaacttttctgtcttctcctatagacttcgcaa |
39370637 |
T |
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| Q |
118 |
actctccacagtaatggcactaaacattactcatatattttggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39370638 |
actctccacagtaatggcactaaacattactcatatattttggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttac |
39370737 |
T |
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| Q |
218 |
tagtgcattataaaccatatccatca |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
39370738 |
tagtgcattataaaccatatccatca |
39370763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 34263626 - 34263699
Alignment:
| Q |
148 |
tcatatattttggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttactagt |
221 |
Q |
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|||||| | ||||||||||||||||| |||||||||||||||||||||||| ||| || | ||||||||||||| |
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| T |
34263626 |
tcatatctcttggttgaaatcttctatcatgttgatcaccataattctttcattgtccgcatttagttactagt |
34263699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 24528764 - 24528698
Alignment:
| Q |
155 |
ttttggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttactagt |
221 |
Q |
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| T |
24528764 |
tttttgttgaaatctcctaccatattgatcaccacaattctttcctttccaaccattagttactagt |
24528698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 2354087 - 2354024
Alignment:
| Q |
158 |
tggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttactagt |
221 |
Q |
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||||||||||||| | |||| |||||||||||| || ||||||| || ||| |||||||||||| |
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| T |
2354087 |
tggttgaaatcttatgccatattgatcaccatatttatttccttaccaaccgttagttactagt |
2354024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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