View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8364_low_12 (Length: 351)
Name: NF8364_low_12
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8364_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 167 - 344
Target Start/End: Complemental strand, 17593992 - 17593818
Alignment:
| Q |
167 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatatatgatactactattgttttggtatgt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
17593992 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatat--atatgatactactattgttttgatatgt |
17593895 |
T |
|
| Q |
267 |
ttatgttaatcgtatctatgttttgttatttggtatgtaggtatgattctgatggtaatgatgcttcaatctctgctt |
344 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
17593894 |
ttatgttaatcgtatttatg-tttgttatttagtatgtaggtatgattctgaaggtagtgatgcttcaatgtctgctt |
17593818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 167 - 344
Target Start/End: Complemental strand, 43314020 - 43313846
Alignment:
| Q |
167 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatatatgatactactattgttttggtatgt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
43314020 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatat--atatgatactactattgttttgatatgt |
43313923 |
T |
|
| Q |
267 |
ttatgttaatcgtatctatgttttgttatttggtatgtaggtatgattctgatggtaatgatgcttcaatctctgctt |
344 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
43313922 |
ttatgttaatcgtatttatg-tttgttatttagtatgtaggtatgattctgaaggtagtgatgcttcaatgtctgctt |
43313846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 167 - 344
Target Start/End: Original strand, 34743310 - 34743484
Alignment:
| Q |
167 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatatatgatactactattgttttggtatgt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
34743310 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataa--atatatatgatactactattgttttgatatgt |
34743407 |
T |
|
| Q |
267 |
ttatgttaatcgtatctatgttttgttatttggtatgtaggtatgattctgatggtaatgatgcttcaatctctgctt |
344 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
34743408 |
ttatgttaatcgtatttatg-tttgttatttagtatgtaggtatgattctgaaggtagtgatgcttcaatgtctgctt |
34743484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 336
Target Start/End: Original strand, 45550982 - 45551066
Alignment:
| Q |
253 |
ttgttttggtatgtttatgttaatcgtatctatgt-tttgttatttggtatgtaggtatgattctgatggtaatgatgcttcaat |
336 |
Q |
| |
|
||||| || |||||||||||||||| ||| ||| | ||| |||||||| || |||||||||||||| ||||| |||||| |||| |
|
|
| T |
45550982 |
ttgttatgatatgtttatgttaatcatatttatatgtttattatttgggctgcaggtatgattctgaaggtaaggatgctgcaat |
45551066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 167 - 344
Target Start/End: Original strand, 21531121 - 21531295
Alignment:
| Q |
167 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatatatgatactactattgttttggtatgt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
21531121 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataa--atatatatgatactactattgttttgatatgt |
21531218 |
T |
|
| Q |
267 |
ttatgttaatcgtatctatgttttgttatttggtatgtaggtatgattctgatggtaatgatgcttcaatctctgctt |
344 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
21531219 |
ttatgttaatcgtatttatg-tttgttatttagtatgtaggtatgattctgaaggtagtgatgcttcaatgtctgctt |
21531295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 167 - 344
Target Start/End: Original strand, 35167062 - 35167236
Alignment:
| Q |
167 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatatatgatactactattgttttggtatgt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
35167062 |
gtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataa--atatatatgatactactattgttttgatatgt |
35167159 |
T |
|
| Q |
267 |
ttatgttaatcgtatctatgttttgttatttggtatgtaggtatgattctgatggtaatgatgcttcaatctctgctt |
344 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
35167160 |
ttatgttaatcgtatttatg-tttgttatttagtatgtaggtatgattctgaaggtagtgatgcttcaatgtctgctt |
35167236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 152 - 336
Target Start/End: Complemental strand, 50135014 - 50134836
Alignment:
| Q |
152 |
aattttatattatatgtttgtttatgtctgatgtgtgaaatgaattaatttcatgataactgcgttaacactttctgataaatatatatatgatactact |
251 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||| || | |||||||||||||| |
|
|
| T |
50135014 |
aattttatattatatgttggtttatgtctgatgtgtgaagtgaattgatttcaggataactgcgttaacactttctg--caaaaaatatatgatactac- |
50134918 |
T |
|
| Q |
252 |
attgttttggtatgtttatgttaatcgtatctatgttttgttatttggtatgtaggtatgattctgatggtaatgatgcttcaat |
336 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50134917 |
--tgttttgatatgtttatgttaatcatatttat-atttgttatttggtatgtaggtatgattctgaaggtaatgatgcttcaat |
50134836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University