View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8364_low_17 (Length: 279)
Name: NF8364_low_17
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8364_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 25 - 254
Target Start/End: Complemental strand, 23426125 - 23425896
Alignment:
| Q |
25 |
gtgcagccaaatccaccaaagagaagccagaaagatgattgagcggctgctgtcaacattgctttttatccaatctcttgcgcagctgatggagaagaag |
124 |
Q |
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| T |
23426125 |
gtgcagccaaatccaccaaagagaagccagaaagatgattgagcggctgctgtcaacattgctttttatccattcttttgcgcagctgatggagaagaag |
23426026 |
T |
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| Q |
125 |
tgtgagtccgagaaattaagcttctgccagatgggtttcgaaaatttgcagtcccgaatacagtgcataaaggatttgtcatcttccccgcatctactac |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23426025 |
tgtgagtccgagaaattaagcttctgccagatgggtttcgaaaacttgcagtcccgaatacagtgcataaaggattcgtcatcttccccgcatctactac |
23425926 |
T |
|
| Q |
225 |
aagttgcggtcgcagccatgtttctatgat |
254 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23425925 |
aagttgcggtcgcagccatgtttctatgat |
23425896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 11587883 - 11588026
Alignment:
| Q |
22 |
gcggtgcagccaaatccaccaaagagaagccagaaagatgattgagcggctgctgtcaacattgctttttatccaatctcttgcgcagctgatggagaag |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||||||||||| |||||||| | || |||||| |
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| T |
11587883 |
gcggtgcagccaaatccaccaaagagaagccagaaagatgattgaacggttgctgtcaacgttgttttttatccaatcttttgcgcagttaatagagaag |
11587982 |
T |
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| Q |
122 |
aagtgtgagtccgagaaattaagcttctgccagatgggtttcga |
165 |
Q |
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| T |
11587983 |
gaatgtgagtccgagaaattaagcttctgccagataagtttcga |
11588026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 24892362 - 24892594
Alignment:
| Q |
22 |
gcggtgcagccaaatccaccaaagagaagccagaaagatgattgagcggctgctgtcaacattgctttttatccaatctcttgcgcagctgatggagaag |
121 |
Q |
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||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
24892362 |
gcggtgcagccaaatccaccacagagaggccagaaaaaagattgagcggctgctgtcaacattgctttttatccagtcttttgcgcagctgatggagaag |
24892461 |
T |
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| Q |
122 |
aagtgtgagtccgagaaattaagcttctgccagatgggtttcgaaaatttgcagtcccgaatacagtgcataaaggatttgtcatcttccccgcatctac |
221 |
Q |
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| T |
24892462 |
aagtgtgagtccgagaaattaagcttctgccagatgggtttcgaaaatttacagtccctaatacagtgcataaaggattcgtcatcttctccgcatctac |
24892561 |
T |
|
| Q |
222 |
tacaagttgcggtcgcagccatgtttctatgat |
254 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
24892562 |
tacaggttgcggtcgcagccatgtttctatgat |
24892594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 23 - 231
Target Start/End: Original strand, 24989186 - 24989394
Alignment:
| Q |
23 |
cggtgcagccaaatccaccaaagagaagccagaaagatgattgagcggctgctgtcaacattgctttttatccaatctcttgcgcagctgatggagaaga |
122 |
Q |
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||||||| |||| ||||||||||||||||||| |||||| |||||||| || ||| | ||||||||||||||| || |||||||| || | ||| | |
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| T |
24989186 |
cggtgcaaccaactccaccaaagagaagccaggaagatggttgagcggttgttgtatgcgttgctttttatccaaccttttgcgcagttggtattgaaaa |
24989285 |
T |
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| Q |
123 |
agtgtgagtccgagaaattaagcttctgccagatgggtttcgaaaatttgcagtcccgaatacagtgcataaaggatttgtcatcttccccgcatctact |
222 |
Q |
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| | ||||| | |||||||||||| ||||||||| ||| |||||||||||||||||||||||||| ||||| |||| || ||||| |||||||||| |
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| T |
24989286 |
aattcgagtcggtgaaattaagcttttgccagatgacttttgaaaatttgcagtcccgaatacagtgtataaacgattcatcttcttctccgcatctacc |
24989385 |
T |
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| Q |
223 |
acaagttgc |
231 |
Q |
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||| ||||| |
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| T |
24989386 |
acaggttgc |
24989394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 23 - 254
Target Start/End: Original strand, 23206390 - 23206621
Alignment:
| Q |
23 |
cggtgcagccaaatccaccaaagagaagccagaaagatgattgagcggctgctgtcaacattgctttttatccaatctcttgcgcagctgatggagaaga |
122 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||| |||| || | |||||||||||| ||||| |||||||| | |||||||| |||||||||||| |
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| T |
23206390 |
cggtgcagccaaatccaccaaagagaggccaggaagttgatggacctgctgctgtcaacgttgctctttatccacaattttgcgcaggtgatggagaaga |
23206489 |
T |
|
| Q |
123 |
agtgtgagtccgagaaattaagcttctgccagatgggtttcgaaaatttgcagtcccgaatacagtgcataaaggatttgtcatcttccccgcatctact |
222 |
Q |
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| | |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |
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| T |
23206490 |
aatccgagtttgagaaattaagcttctgccagatgattttcgaaaatttgcagtcccgaatacagtgcataaaggattcatcttcttccccgcatctgct |
23206589 |
T |
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| Q |
223 |
acaagttgcggtcgcagccatgtttctatgat |
254 |
Q |
| |
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||| ||||| | ||| | ||||||||||||| |
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| T |
23206590 |
acatgttgcagccgctactatgtttctatgat |
23206621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 40730237 - 40730152
Alignment:
| Q |
146 |
ttctgccagatgggtttcgaaaatttgcagtcccgaatacagtgcataaaggatttgtcatcttccccgcatctactacaagttgc |
231 |
Q |
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||||||||||| || || ||||| ||| ||||||||||||| ||||| || |||| || ||||||||||||| | ||||||||| |
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| T |
40730237 |
ttctgccagattggcttagaaaacttgtagtcccgaatacaatgcatgaaagattcatccacttccccgcatctcccacaagttgc |
40730152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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