View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8364_low_21 (Length: 254)
Name: NF8364_low_21
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8364_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 4223826 - 4223593
Alignment:
| Q |
16 |
aataaatgagatacgttacgtgacgtgagctagcaaccaaaaggaagaaaatagagaatgtttattattggttacctgagaaacaacgacatggcggacg |
115 |
Q |
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| T |
4223826 |
aataaatgagatacgttacgtgacgtgagctagcaaccaaaaggaagaaaatagagaatgtttattattggttacctgagaaacaacgacatggcggacg |
4223727 |
T |
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| Q |
116 |
ctactatccacaccatcatgctctccaaatgaatgagaatgac------catgtccatcaccatggttttgatgtgaatgtccatgctgcgacgcatgag |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4223726 |
ctactatccacaccatcatgctctccaaatgaatgagaatgaccatgaccatgtccatcaccatggttttgatgtgaatgtccatgttgcgacgcatgag |
4223627 |
T |
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| Q |
210 |
catgcatccccacaatatgcattccaccaccaaa |
243 |
Q |
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| T |
4223626 |
catgcatccccacaatatgcattccaccaccaaa |
4223593 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 239
Target Start/End: Original strand, 48080889 - 48080919
Alignment:
| Q |
209 |
gcatgcatccccacaatatgcattccaccac |
239 |
Q |
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| T |
48080889 |
gcatgcatccccacaatatgcattccaccac |
48080919 |
T |
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