View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8364_low_22 (Length: 254)
Name: NF8364_low_22
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8364_low_22 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 54918705 - 54918942
Alignment:
| Q |
16 |
aacgcgcttgaggaatgaaacagttttgtggtttattttgacatgaaccaaaactatatatagaacaaaaaatataaaaccatttttctgtgcatagaat |
115 |
Q |
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| T |
54918705 |
aacgcgcttgagggatgaaacagttttgtggtttattttgacatgaaccaaaactatatatagaacaaaaaatataaaaccatttttctgtgcatagaat |
54918804 |
T |
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| Q |
116 |
ccttaatgccattttccaaggtatcatcattcaattctcgttggaaatttgtactcattgaactactatcattttccaatgttaactcaataattgtact |
215 |
Q |
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| T |
54918805 |
ccttaatgccattttccaaggtatcatctttcaattctcattggaaatttgtactcattgaactactatcattttccaatgctaactcaataattgtact |
54918904 |
T |
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| Q |
216 |
cattagactacttccatttttcaagggttaatcgtttca |
254 |
Q |
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| T |
54918905 |
cattagactactttcatttttcaa-ggttaatcgtttca |
54918942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 54921930 - 54921995
Alignment:
| Q |
185 |
cattttccaatgttaactcaataattgtactcattagactacttccatttttcaagggttaatcgt |
250 |
Q |
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| T |
54921930 |
cattttccaatgctaactccataattgtagtcattagactactaccattttccaaggcttaatcgt |
54921995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 54922126 - 54922227
Alignment:
| Q |
113 |
aatccttaatgccattttccaaggtatcatcattcaattctcgttggaaatttgtactcattgaactactatcattttccaatgttaactcaataattgt |
212 |
Q |
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| T |
54922126 |
aatccttaatgtcattttccaaagtttaatcattcatcactcatttgaaatttactctcattatactactatcattttccaattctaactcacaaattgt |
54922225 |
T |
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| Q |
213 |
ac |
214 |
Q |
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|| |
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| T |
54922226 |
ac |
54922227 |
T |
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