View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8364_low_24 (Length: 243)

Name: NF8364_low_24
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8364_low_24
NF8364_low_24
[»] chr8 (1 HSPs)
chr8 (20-237)||(25104470-25104685)
[»] chr2 (3 HSPs)
chr2 (133-227)||(30538304-30538391)
chr2 (176-217)||(6117721-6117762)
chr2 (163-212)||(32104079-32104128)
[»] chr6 (2 HSPs)
chr6 (163-209)||(10031563-10031611)
chr6 (163-210)||(19369809-19369858)
[»] chr5 (5 HSPs)
chr5 (174-212)||(309148-309186)
chr5 (163-212)||(15302515-15302564)
chr5 (179-212)||(19167613-19167646)
chr5 (130-163)||(32979596-32979629)
chr5 (174-222)||(9031956-9032004)
[»] scaffold0122 (1 HSPs)
scaffold0122 (174-210)||(10328-10364)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 25104470 - 25104685
Alignment:
Q  20 atagcgatgctgataggatcaaagaataaaatactggataacaacttgctttgtgccaccgacactgctaatagaaggtgtaacactgtgtcttacacgt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25104470 atagcgatgctgataggatcaaagaataaaatactggataacaacttgctttgtgccaccgacacttctaatagaaggtgtaacactgtgtcttacacgt 25104569  T
Q  120 gcctggacacacactgacacgacatcgacacatgtgattacatttacattgaattgtcattttgtcaaaattttatcggtgtcaacgtgtctggtgtccg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  25104570 gcctggacacacactgacacgacatcgacacatgtgattacatttacattgaattgtcattttgtcaaaattttatcggtgtcaa--tgtctggtgtccg 25104667  T
Q  220 tgtatgtgtctctgcttc 237  Q
    ||||||||||| ||||||    
T  25104668 tgtatgtgtctgtgcttc 25104685  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 30538391 - 30538304
Alignment:
Q  133 ctgacacgacatcgacacatgtgattacatttacattgaattgtcattttgtcaaaattttatcggtgtcaacgtgtctggtgtccgtgtatgtg 227  Q
    |||||||||||| |||||||||||||||||| |      ||||||||||| |||||||| |||| |||||||| ||| |||||||||||| ||||    
T  30538391 ctgacacgacattgacacatgtgattacattaa------attgtcattttttcaaaattgtatctgtgtcaacttgt-tggtgtccgtgtctgtg 30538304  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 6117721 - 6117762
Alignment:
Q  176 tcattttgtcaaaattttatcggtgtcaacgtgtctggtgtc 217  Q
    ||||||| ||||||| ||||||||||||||||||| ||||||    
T  6117721 tcattttatcaaaatattatcggtgtcaacgtgtcaggtgtc 6117762  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 32104079 - 32104128
Alignment:
Q  163 ttacattgaattgtcattttgtcaaaattttatcggtgtcaacgtgtctg 212  Q
    |||||||||||||||||||| ||||| | ||| || ||||||||||||||    
T  32104079 ttacattgaattgtcattttttcaaattattagcgctgtcaacgtgtctg 32104128  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 10031611 - 10031563
Alignment:
Q  163 ttacattgaatt--gtcattttgtcaaaattttatcggtgtcaacgtgt 209  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  10031611 ttacattgaattatgtcattttctcaaaattttatcggtgtcaacgtgt 10031563  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 19369858 - 19369809
Alignment:
Q  163 ttacattgaatt--gtcattttgtcaaaattttatcggtgtcaacgtgtc 210  Q
    ||||||||||||  |||||||| ||||||||||||| |||||||||||||    
T  19369858 ttacattgaattatgtcattttctcaaaattttatccgtgtcaacgtgtc 19369809  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 309186 - 309148
Alignment:
Q  174 tgtcattttgtcaaaattttatcggtgtcaacgtgtctg 212  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  309186 tgtcattttctcaaaattttatcggtgtcgacgtgtctg 309148  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 15302564 - 15302515
Alignment:
Q  163 ttacattgaattgtcattttgtcaaaattttatcggtgtcaacgtgtctg 212  Q
    |||| ||||||||||||||| |||||||||||||| |||| | |||||||    
T  15302564 ttaccttgaattgtcattttttcaaaattttatcgttgtcgatgtgtctg 15302515  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 19167613 - 19167646
Alignment:
Q  179 ttttgtcaaaattttatcggtgtcaacgtgtctg 212  Q
    |||| |||||||||||||||||||||||||||||    
T  19167613 ttttttcaaaattttatcggtgtcaacgtgtctg 19167646  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 32979596 - 32979629
Alignment:
Q  130 acactgacacgacatcgacacatgtgattacatt 163  Q
    |||||||||||||||| |||||||||||||||||    
T  32979596 acactgacacgacatcaacacatgtgattacatt 32979629  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 9031956 - 9032004
Alignment:
Q  174 tgtcattttgtcaaaattttatcggtgtcaacgtgtctggtgtccgtgt 222  Q
    ||||||||  |||||| ||||||||||||| ||| ||||||||||||||    
T  9031956 tgtcatttcctcaaaaatttatcggtgtcaccgtatctggtgtccgtgt 9032004  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 10328 - 10364
Alignment:
Q  174 tgtcattttgtcaaaattttatcggtgtcaacgtgtc 210  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  10328 tgtcattttgtcaaaattttatctgtgtcaatgtgtc 10364  T

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