View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8364_low_27 (Length: 238)

Name: NF8364_low_27
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8364_low_27
NF8364_low_27
[»] chr8 (2 HSPs)
chr8 (33-223)||(21239239-21239427)
chr8 (155-219)||(30911384-30911448)
[»] chr2 (4 HSPs)
chr2 (168-217)||(8024799-8024848)
chr2 (155-216)||(8192481-8192542)
chr2 (147-216)||(32526215-32526284)
chr2 (155-223)||(4618808-4618876)
[»] chr5 (2 HSPs)
chr5 (155-203)||(21042668-21042716)
chr5 (162-216)||(36895438-36895492)
[»] chr6 (2 HSPs)
chr6 (162-216)||(3907554-3907608)
chr6 (168-216)||(17149586-17149634)
[»] chr4 (3 HSPs)
chr4 (107-137)||(48992474-48992504)
chr4 (163-216)||(7093390-7093443)
chr4 (177-217)||(19220561-19220601)
[»] chr3 (2 HSPs)
chr3 (155-217)||(50582998-50583060)
chr3 (155-216)||(4252526-4252587)
[»] chr7 (1 HSPs)
chr7 (161-205)||(37056230-37056274)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 21239239 - 21239427
Alignment:
Q  33 tctatttaacaaatataatatatataacaactatannnnnnnaaggaatatacatagcaactattatatcactataaactatgcaaaagaaattaatatg 132  Q
    ||||||||||||| ||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21239239 tctatttaacaaacataatatatataacaactat--ttttttaagaaatatacatagcaactattatatcactataaactatgcaaaagaaattaatatg 21239336  T
Q  133 tgatgtaaactacacatttagagttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgattttccctg 223  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21239337 tgatgtaaactacacatttagagttggcttagtggttggcttgcgatcttggagtgtgttcctttcaaggtttcaagtttgattttccctg 21239427  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 30911448 - 30911384
Alignment:
Q  155 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgattttc 219  Q
    |||||| || |||||| |||| ||||||||||| || |||| ||||||||||| ||| |||||||    
T  30911448 gttggcctaatgattgatttgagatcttggagtttgctcctctcaaggtttcatgtttgattttc 30911384  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 8024848 - 8024799
Alignment:
Q  168 ttggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgattt 217  Q
    |||||||||||| |||||||||||| || |||||||||||||||||||||    
T  8024848 ttggtttgcgatgttggagtgtgtttctctcaaggtttcaagttcgattt 8024799  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 8192542 - 8192481
Alignment:
Q  155 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 216  Q
    |||||| ||||| |||| ||| |||||||||||||| |||| ||||||| ||| ||||||||    
T  8192542 gttggcctagtggttggcttgggatcttggagtgtgctcctctcaaggtctcaggttcgatt 8192481  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 32526284 - 32526215
Alignment:
Q  147 catttagagttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 216  Q
    ||||| |||||||||||||| ||| |||| ||||||| ||| || |||| ||||||| ||| ||||||||    
T  32526284 catttggagttggcttagtggttgatttgggatcttgaagtttgctcctctcaaggtctcaggttcgatt 32526215  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 4618876 - 4618808
Alignment:
Q  155 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgattttccctg 223  Q
    |||||| ||||| |||| |||  |||||||||| || |||| ||||||||||| ||||||||| |||||    
T  4618876 gttggcctagtggttggcttggaatcttggagtatgctcctctcaaggtttcaggttcgatttcccctg 4618808  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 21042716 - 21042668
Alignment:
Q  155 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggt 203  Q
    ||||| ||||||||||||||| ||||||||||| || ||||||||||||    
T  21042716 gttggtttagtgattggtttgggatcttggagtttgctcctttcaaggt 21042668  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 36895438 - 36895492
Alignment:
Q  162 tagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 216  Q
    |||||||| | ||| |||||||||||||| |||| ||||||||||| ||||||||    
T  36895438 tagtgattagcttgggatcttggagtgtgctcctctcaaggtttcatgttcgatt 36895492  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 3907554 - 3907608
Alignment:
Q  162 tagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 216  Q
    ||||| |||||||| |||||||| ||||| |||| ||||| ||||||||||||||    
T  3907554 tagtggttggtttgggatcttggggtgtgctcctctcaagatttcaagttcgatt 3907608  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 17149634 - 17149586
Alignment:
Q  168 ttggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 216  Q
    |||||||| |||||||||||||| |||| ||||||| ||| ||||||||    
T  17149634 ttggtttgggatcttggagtgtgctcctctcaaggtctcaggttcgatt 17149586  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 137
Target Start/End: Complemental strand, 48992504 - 48992474
Alignment:
Q  107 taaactatgcaaaagaaattaatatgtgatg 137  Q
    |||||||||||||||||||||||||||||||    
T  48992504 taaactatgcaaaagaaattaatatgtgatg 48992474  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 7093390 - 7093443
Alignment:
Q  163 agtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 216  Q
    |||| |||| ||| |||||||||||||| |||||||||||||| | ||||||||    
T  7093390 agtggttggcttgggatcttggagtgtgctcctttcaaggttttaggttcgatt 7093443  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 19220561 - 19220601
Alignment:
Q  177 gatcttggagtgtgttcctttcaaggtttcaagttcgattt 217  Q
    |||||||||||||| |||| ||||||||||| |||||||||    
T  19220561 gatcttggagtgtgctcctctcaaggtttcaggttcgattt 19220601  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 50582998 - 50583060
Alignment:
Q  155 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgattt 217  Q
    |||||| ||||| |||||||| ||||||||||| || |||| | ||||||||| |||||||||    
T  50582998 gttggcctagtggttggtttgggatcttggagtttgctcctcttaaggtttcaggttcgattt 50583060  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 4252587 - 4252526
Alignment:
Q  155 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 216  Q
    |||||| ||||| |||| ||| |||||||||||||| |||| ||||||| ||||||| ||||    
T  4252587 gttggcctagtggttggcttgagatcttggagtgtgctcctctcaaggtctcaagtttgatt 4252526  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 37056230 - 37056274
Alignment:
Q  161 ttagtgattggtttgcgatcttggagtgtgttcctttcaaggttt 205  Q
    |||||| |||||||| |||||||||||||| |||| |||||||||    
T  37056230 ttagtggttggtttgtgatcttggagtgtgctcctctcaaggttt 37056274  T

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