View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8364_low_3 (Length: 434)
Name: NF8364_low_3
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8364_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Complemental strand, 43969833 - 43969436
Alignment:
| Q |
17 |
caatgattgaggtttcaaccttatatttcatgttatcaatgggagtcttgaagagtttatagtggtcatgtattaggcattttgatgtctttgattttct |
116 |
Q |
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| T |
43969833 |
caatgattgaggtttcaaccttatatttcatgttatcaatgggagtcttgaagagtttatagtggtcatgtattaggcattttgatgtctttgattttct |
43969734 |
T |
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| Q |
117 |
tcattttggtcacacacaagtgtggggtactagcaacattaatgcgatttaacctccactagtgtgatccaaagtgaggccatattgatatcacataaac |
216 |
Q |
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| T |
43969733 |
tcattttggtcacacacaagtgtggggtactagcaacattaatgcgatttaacctccacttgtgtgatccaaagtgaggcc------atatcacatagac |
43969640 |
T |
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| Q |
217 |
tcttttgttttcaccaagtaaatacaattaataagtctcgtcaacttgaatatgactgaaatatcttttggcaaacatagggtgctttagcgtgcaaaga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43969639 |
tcttttgttttcaccaagtaaatacaattaataagtctcgtcaacttgaatatgactgaaatatcttttggcaaacatagggtgctttagcgtgcaaaga |
43969540 |
T |
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| Q |
317 |
taggattccgtttggtatccacaaatctttaatggtgaaaagggttagaaagtgtggnnnnnnncaagctcaagtgctcggctatcaaatcttccaatgt |
416 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43969539 |
taggattccgtttagtatccacaaatctttaatggtgaaaagggttagaaagtgtgcaaaaaaacaagctcaagtgctcggctatcaaatcttccaatgt |
43969440 |
T |
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