View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8364_low_4 (Length: 411)
Name: NF8364_low_4
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8364_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 393
Target Start/End: Original strand, 29362125 - 29362509
Alignment:
| Q |
8 |
tgaaatgaaatcacatacataatcctgcaactcagaggaaccaagctgagaagaaagacactgtcacactcactaggttttattcatccatggcgctaac |
107 |
Q |
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| T |
29362125 |
tgaaatgaaatcacatacataatcctgcaactcagaggaaccaagctgagaagaaaaacactgtcacactcactagggtttattcatccatggcgctaac |
29362224 |
T |
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| Q |
108 |
cttcatcttcctcttcttcatccctcacctcctatcttccatctcagcacaatccacctccatggaatcggtccccgatcttcagagcaccatgtacacc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29362225 |
cttcatcttcctcttcttcatccctcacctcctatcttccatctcagcacaatccacctccatggaatcggtccccgatcttcagagcaccatgtacacc |
29362324 |
T |
|
| Q |
208 |
gacgttgacggatttccttgcgttcggctgctaagtctctctggaaccatcggttgttcaagtaagccccaatttcacaattcatttgtgtttttagtgg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29362325 |
gacgttgacggatttccttgcgttcggctgctaagtctctctggaaccatcggttgttcaagtaagccccaatttcacaattca-ttgtgtttttagtgg |
29362423 |
T |
|
| Q |
308 |
ttaatttttgtaatttgaagtgttatttgtgattataagctgattaatgttgtatttgtggtaatttgttagatcctgggcgagat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29362424 |
ttaatttttgtaatttgaagtgttatttgtgattataagctgattaatgttgtatttgtggtaatttgttagatcctgggcgagat |
29362509 |
T |
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