View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8364_low_8 (Length: 378)
Name: NF8364_low_8
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8364_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 53 - 362
Target Start/End: Complemental strand, 27499976 - 27499670
Alignment:
| Q |
53 |
gaaataactccgtatggattaagaatcagtttgataaaattctctatgaatgcttatgataaaaagagagatcaaaataatcttataataaataattaag |
152 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27499976 |
gaaataactccatacagattaagaatcagtttgataaaattctctatgaatgcttatgataaaaagagagatcaaaataatcttataataaataattaag |
27499877 |
T |
|
| Q |
153 |
catttgtttaagcaagagcttctcatatatgttgaaatttgattctaaagttcagttttttattagaagctgtattatataatttctcaatacacatcta |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27499876 |
catttgtttaagcaagagcttctcatatatgttgaaatttgattctaaagttcagtttt---ttagaagctgtattatataatttctcaatacacatcta |
27499780 |
T |
|
| Q |
253 |
taagcctataagcatatatatgtcgaccataagcctctctctataagtctatgttgtggaacccacttgaaagtgccttaggaaacaaaggtgatgtttt |
352 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27499779 |
taagcttataagcatatatatgtcgaccataagcctctctctataagtctatactgtggaacccacttgaaagtgccttaggaaacaaaggtgatgtttt |
27499680 |
T |
|
| Q |
353 |
tgtaacttta |
362 |
Q |
| |
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|||||||||| |
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| T |
27499679 |
tgtaacttta |
27499670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 53 - 362
Target Start/End: Complemental strand, 27514768 - 27514462
Alignment:
| Q |
53 |
gaaataactccgtatggattaagaatcagtttgataaaattctctatgaatgcttatgataaaaagagagatcaaaataatcttataataaataattaag |
152 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27514768 |
gaaataactccatacagattaagaatcagtttgataaaattctctatgaatgcttatgataaaaagagagatcaaaataatcttataataaataattaag |
27514669 |
T |
|
| Q |
153 |
catttgtttaagcaagagcttctcatatatgttgaaatttgattctaaagttcagttttttattagaagctgtattatataatttctcaatacacatcta |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27514668 |
catttgtttaagcaagagcttctcatatatgttgaaatttgattctaaagttcagtttt---ttagaagctgtattatataatttctcaatacacatcta |
27514572 |
T |
|
| Q |
253 |
taagcctataagcatatatatgtcgaccataagcctctctctataagtctatgttgtggaacccacttgaaagtgccttaggaaacaaaggtgatgtttt |
352 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27514571 |
taagcttataagcatatatatgtcgaccataagcctctctctataagtctatactgtggaacccacttgaaagtgccttaggaaacaaaggtgatgtttt |
27514472 |
T |
|
| Q |
353 |
tgtaacttta |
362 |
Q |
| |
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|||||||||| |
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| T |
27514471 |
tgtaacttta |
27514462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 53 - 267
Target Start/End: Complemental strand, 27493318 - 27493108
Alignment:
| Q |
53 |
gaaataactccgtatggattaagaatcagtttgataaaattctctatgaatgcttatgataaaaagagagatcaaaataatcttataataaataattaag |
152 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
27493318 |
gaaataactccatacagattaagaatcagtttgataaaattctctaggaatgcttatgataaaaagagagatcaaattaatcttataataaataattagg |
27493219 |
T |
|
| Q |
153 |
catttgtttaagcaagagcttctcatatatgttgaaatttgattctaaagttcagttttttattagaagctgtattatataatttctcaatacacatcta |
252 |
Q |
| |
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| ||| ||||||||||||||||||| |||||||| ||||| ||||| |||| |||||| | |||||||||||||| ||||||||||||| ||||||| |
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| T |
27493218 |
c-tttttttaagcaagagcttctcacttatgttgatatttgcttctacagttaagtttt---tcagaagctgtattatttaatttctcaataaacatcta |
27493123 |
T |
|
| Q |
253 |
taagcctataagcat |
267 |
Q |
| |
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||||||||||||||| |
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|
| T |
27493122 |
taagcctataagcat |
27493108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 281 - 362
Target Start/End: Complemental strand, 27520869 - 27520788
Alignment:
| Q |
281 |
ataagcctctctctataagtctatgttgtggaacccacttgaaagtgccttaggaaacaaaggtgatgtttttgtaacttta |
362 |
Q |
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|||||| ||| ||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||| |
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| T |
27520869 |
ataagcatctttctataagtctatattgtggaacccacatgaaagtgccttaagaaacaaaggtgaagtttttgcaacttta |
27520788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 27493371 - 27493337
Alignment:
| Q |
10 |
cagagaaggaagagtataaatgcatgttgcataca |
44 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |
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| T |
27493371 |
cagacaaggaagagtataaatgcatgttgcataca |
27493337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 27500029 - 27499995
Alignment:
| Q |
10 |
cagagaaggaagagtataaatgcatgttgcataca |
44 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
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|
| T |
27500029 |
cagacaaggaagagtataaatgcatgttgcataca |
27499995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 27514821 - 27514787
Alignment:
| Q |
10 |
cagagaaggaagagtataaatgcatgttgcataca |
44 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |
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|
| T |
27514821 |
cagacaaggaagagtataaatgcatgttgcataca |
27514787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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