View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8365_high_1 (Length: 559)
Name: NF8365_high_1
Description: NF8365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8365_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Complemental strand, 32489077 - 32488557
Alignment:
| Q |
19 |
cctgccattgaaaatgatccaacagaagaaacagttactgaagacactgctgaaacagattctttcatctactacgatgacagtgatatacaagaaagac |
118 |
Q |
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| T |
32489077 |
cctgccattgaaaatgatccaacagaagaaacagttactgaagacactgctgaaacagattctttcatctactacgatgacagtgatatacaagaaagac |
32488978 |
T |
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| Q |
119 |
tagaagaatgccaaaacagcattcttggaaagattgtatcggaaaaagctattcacaggaactcaattcaaaacgcgttatctaacatctggtgtaatcc |
218 |
Q |
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| T |
32488977 |
tagaagaatgccaaaacagcattcttggaaagattgtatcggaaaaagctattcacaggaactcaattcaaaacgcgttatctaacatctggtgtaatcc |
32488878 |
T |
|
| Q |
219 |
taagggttttagggttgaacatatcggagacaagttattccatttctttatggatgaacaagaagatatgaagagaataattcgaggaaatccttggttt |
318 |
Q |
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| T |
32488877 |
taagggttttagggttgaacatatcggagacaagttattccatttctttatggatgaacaagaagatacgaagagaataattcgaggaaatccttggttt |
32488778 |
T |
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| Q |
319 |
tttaggaattcttggctcatcgtacatccttggagaagagacatagacgcgcagtcgttagagtttcgtcatgctcccatatggattcaactatggggat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
32488777 |
tttaggaattcttggctcatcgtacatccttggagaagagacatagacgcgcggtcgttagagtttcgtcatgctcccatatgggttcaactacggggat |
32488678 |
T |
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| Q |
419 |
tacctactcaatgcagaactaagcaaatgggaatcaagataggatccagcatcggtactgttcttgcatccgagttatacgagtatcccaacaaaaaact |
518 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
32488677 |
tacctactcaatgcagaactaagcagatgggaatcaagataggatccagcattggtactgttcttgcatccgagttatacgaatatcccgacaaaaaact |
32488578 |
T |
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| Q |
519 |
gatcatcaaaatcaaggtaaa |
539 |
Q |
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||||||||||||||||||||| |
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| T |
32488577 |
gatcatcaaaatcaaggtaaa |
32488557 |
T |
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