View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8365_high_2 (Length: 433)
Name: NF8365_high_2
Description: NF8365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8365_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 416
Target Start/End: Original strand, 25836947 - 25837350
Alignment:
| Q |
13 |
tacattattctccctgcacaaatatatcagaaatggaaagaagagtttgcagctatgtctcaattgtacgataaaaatggcaattattttgactgttttg |
112 |
Q |
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| T |
25836947 |
tacatcattctccctgcacaaatatatcagaaatggaaagtagagtttgcagctctgtctcaattgtacgataaaaatggcaatttttttgactgttttg |
25837046 |
T |
|
| Q |
113 |
tttgaagtgtgggttctgggaaggctaggctagcatctaacttcagagccattcgagaattacaccgcatcnnnnnnnccattgatatcatattcgattt |
212 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| || |
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| T |
25837047 |
ttcgaagcgtgggttctgggaaggctaggctagcatctaacttcagagccattcgagaattacaccacatcaaaaaaaccattgatatcagattcgactt |
25837146 |
T |
|
| Q |
213 |
tgtggatggaatgtatttggttttgtcaccaacaggcacaggtaaaccaaagataccagttgtcaaccccaaccggaaaagattccacaaacttgttaat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |
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| T |
25837147 |
tgtggatggaatgtatttggttttgtcaccaacaggcacaggtaaaccaaagataccggttgtcaaccccaacccgaaaggattccacaaacttgttaat |
25837246 |
T |
|
| Q |
313 |
atgcatgagtcgaccaacgataattcattggcaaaagaaaacaacatctgggggaaggatgtaccattgtaggagtctgtagtttctgagtccatggtta |
412 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| |||||||||| | |
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| T |
25837247 |
atgcatgagtcgaccaatgataattcattggcaaaagaaaacaacatatgggggaaggatgtaccattgtgggagtctgcagtttctaagtccatggtca |
25837346 |
T |
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| Q |
413 |
aagg |
416 |
Q |
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|||| |
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| T |
25837347 |
aagg |
25837350 |
T |
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