View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8365_high_5 (Length: 206)
Name: NF8365_high_5
Description: NF8365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8365_high_5 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 36759050 - 36758844
Alignment:
| Q |
1 |
tcagagttgtatcatcaaaactgatttgtgagcaccatgttgttgtaatgttaatagccattgcaattaataacttccgaactcgaatagtacgagcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36759050 |
tcagagttgtatcatcaaaactgatttgtgagcaccatgttgttgtaatgttaatagccattgcaattaataacttccgaactcgaatagtacgagcttg |
36758951 |
T |
|
| Q |
101 |
agtttggatttgagcacaaaaatgaattcccacagctccaatgctgttttctgtatattagaggtctgaaaa-accctctctgtaaaatgtatcataacc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36758950 |
agtttggatttgagcacaaaaatgaattcccacagctccaatgctgttttctgtatattagaggtctgaaaagaccctctctgtaaaatgtatcataacc |
36758851 |
T |
|
| Q |
200 |
cacacac |
206 |
Q |
| |
|
||||||| |
|
|
| T |
36758850 |
cacacac |
36758844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University