View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8366_high_5 (Length: 337)
Name: NF8366_high_5
Description: NF8366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8366_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 245383 - 245680
Alignment:
| Q |
20 |
cattgggttgtcacttaatatatagttagaaattacataaatatatttatttgatttgatctagttctannnnnnnnnnnnnnatagatatataatggaa |
119 |
Q |
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| T |
245383 |
cattgggttgtcacttaatatatagttagaaattacataaatatatttatttgatttgatctagttctatttttattttttttatagatat--aatggaa |
245480 |
T |
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| Q |
120 |
agaagatagagttgaaatttgagatcaaactcgcatagaacgtcgtcacaactgactattaggttgtagatgtcatgtatgatagaatactagagtttaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
245481 |
agaagatagagttgaaatttgagatcaaactcgcatagaacgtcgtcacaactgactattaggttgtagatgtcatgtatgatagaacattagagtttaa |
245580 |
T |
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| Q |
220 |
gaacacacatagaatatatcccttttttaaatttttcttagtgatgttcttgtaactatacatattattcaaaacaattaagacaattagaagggagtca |
319 |
Q |
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| T |
245581 |
gaacacacataaaatatatcccttttttaaatttttcttagtgatgttcttgtaactatacatattattcaaaacaattaagacaattagaagggagtca |
245680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 245220 - 245250
Alignment:
| Q |
5 |
agttttagtatctttcattgggttgtcactt |
35 |
Q |
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| T |
245220 |
agttttagtatctttcattgggttgtcactt |
245250 |
T |
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