View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8366_high_7 (Length: 271)
Name: NF8366_high_7
Description: NF8366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8366_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 73 - 256
Target Start/End: Complemental strand, 28740817 - 28740642
Alignment:
| Q |
73 |
tacttgaaaaggaaacaactaccgtcactctcacatctcacaagtcacaacaccgattgggtgagttagaaacattaatttatttgagttagggtttatc |
172 |
Q |
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| T |
28740817 |
tacttgaaaaggaaacaactaccttcactctcaca-------agtcacaacaccgatcgggtgagttagaaacattaatttatttgagttagggttt-tc |
28740726 |
T |
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| Q |
173 |
aagttgagatggccaacaacatttctaatatggtagagttggttgaggctgaagaaagtttcatacatgctacacaacttatct |
256 |
Q |
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| T |
28740725 |
aagttgagatggccaacaacatttctaatatggtagagttggttgaggctgaagaaagtttcatacatgctacacaacttatct |
28740642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 73 - 256
Target Start/End: Complemental strand, 28637033 - 28636858
Alignment:
| Q |
73 |
tacttgaaaaggaaacaactaccgtcactctcacatctcacaagtcacaacaccgattgggtgagttagaaacattaatttatttgagttagggtttatc |
172 |
Q |
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| T |
28637033 |
tacttgaaaaggaaacaactaccttcactctcaca-------agtcacaacaccgatcgggtgagttagaaacattaatttatttgtgttagggttt-tc |
28636942 |
T |
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| Q |
173 |
aagttgagatggccaacaacatttctaatatggtagagttggttgaggctgaagaaagtttcatacatgctacacaacttatct |
256 |
Q |
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| T |
28636941 |
aagttgagatagccaacaacatttctaatatggtagagttggttgaggctgaagaaagtttcatacatgctacacaacttatct |
28636858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 28740901 - 28740840
Alignment:
| Q |
10 |
aaatgtaaaaccaatgacgcccttatcaatacgataaaaagacaagactgcgccgcatgact |
71 |
Q |
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| T |
28740901 |
aaatgtaaaaccaatgacgtccttatcaatacgataaaaaggcaagactttgccgcatgact |
28740840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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