View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8366_low_10 (Length: 320)

Name: NF8366_low_10
Description: NF8366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8366_low_10
NF8366_low_10
[»] chr6 (4 HSPs)
chr6 (1-158)||(20487204-20487361)
chr6 (1-158)||(20481642-20481799)
chr6 (72-158)||(22970091-22970177)
chr6 (72-158)||(23818217-23818303)
[»] chr3 (8 HSPs)
chr3 (1-158)||(21966568-21966724)
chr3 (1-158)||(21989004-21989160)
chr3 (1-158)||(21966983-21967140)
chr3 (1-158)||(21989419-21989576)
chr3 (167-303)||(21696079-21696217)
chr3 (170-264)||(21696548-21696642)
chr3 (180-266)||(55327769-55327854)
chr3 (221-264)||(3169716-3169759)
[»] chr8 (6 HSPs)
chr8 (1-158)||(24860169-24860326)
chr8 (2-158)||(24858944-24859099)
chr8 (197-264)||(6220450-6220517)
chr8 (200-286)||(33184279-33184365)
chr8 (197-251)||(16913017-16913071)
chr8 (220-264)||(27052684-27052728)
[»] chr5 (7 HSPs)
chr5 (171-267)||(38061604-38061700)
chr5 (221-264)||(23662170-23662213)
chr5 (221-264)||(23796375-23796418)
chr5 (221-266)||(13169999-13170043)
chr5 (221-262)||(17400550-17400591)
chr5 (217-265)||(2377332-2377380)
chr5 (220-264)||(28559238-28559282)
[»] chr2 (2 HSPs)
chr2 (221-291)||(29379984-29380055)
chr2 (72-158)||(28240793-28240879)
[»] chr4 (6 HSPs)
chr4 (221-294)||(2469871-2469945)
chr4 (72-158)||(11384192-11384278)
chr4 (72-158)||(44491719-44491805)
chr4 (221-290)||(53863610-53863680)
chr4 (221-282)||(25055866-25055927)
chr4 (221-288)||(25056187-25056255)
[»] scaffold0625 (1 HSPs)
scaffold0625 (96-158)||(8000-8062)
[»] chr7 (2 HSPs)
chr7 (96-158)||(18993635-18993697)
chr7 (221-289)||(6694508-6694577)
[»] chr1 (1 HSPs)
chr1 (72-158)||(48678058-48678144)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 20487204 - 20487361
Alignment:
Q  1 accatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatgaacgaatcttaattaaaggaccaaaatgaaactaaaattaa 100  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||    
T  20487204 accatgtgtgagacttaacgtttcttaattaaagtttgacggaaaggacataaacgatggacggatcttaattaaaggaccaaaatgagactaaaattaa 20487303  T
Q  101 ttaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20487304 ttaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 20487361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 20481799 - 20481642
Alignment:
Q  1 accatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatgaacgaatcttaattaaaggaccaaaatgaaactaaaattaa 100  Q
    ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  20481799 accatgtgtgagacttagcgtttcttaattaaagtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgagactaaaattaa 20481700  T
Q  101 ttaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20481699 ataagggaccaaaccgaattttggtaattatttaagggaccagatatataattaagcc 20481642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 22970177 - 22970091
Alignment:
Q  72 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
    ||||||||||||| || | | ||||||||| | ||| |||||  ||| |||  ||||||||||||||||||  ||||||||||||||    
T  22970177 ttaaaggaccaaattggagcgaaaattaataagggggccaaattgaaatttcataattatttaagggaccatttatataattaagcc 22970091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 23818217 - 23818303
Alignment:
Q  72 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
    ||||||||||||| || | | ||||||||| | ||| |||||  ||| |||  ||||||||||||||||||  ||||||||||||||    
T  23818217 ttaaaggaccaaattggagcgaaaattaataagggggccaaattgaaatttcataattatttaagggaccatttatataattaagcc 23818303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 21966724 - 21966568
Alignment:
Q  1 accatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatgaacgaatcttaattaaaggaccaaaatgaaactaaaattaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21966724 accatgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaa 21966626  T
Q  101 ttaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21966625 ttaaaggaccaaaacgaattttggtaattatttaagggaccaaatatataattaagcc 21966568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 21989160 - 21989004
Alignment:
Q  1 accatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatgaacgaatcttaattaaaggaccaaaatgaaactaaaattaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21989160 accatgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaa 21989062  T
Q  101 ttaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21989061 ttaaaggaccaaaacgaattttggtaattatttaagggaccaaatatataattaagcc 21989004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 21966983 - 21967140
Alignment:
Q  1 accatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatgaacgaatcttaattaaaggaccaaaatgaaactaaaattaa 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  21966983 accatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaacttaaattaa 21967082  T
Q  101 ttaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  21967083 ttaagggaccaaaatgaatattggtaattatttgagggaccagatatataattaagcc 21967140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 21989419 - 21989576
Alignment:
Q  1 accatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatgaacgaatcttaattaaaggaccaaaatgaaactaaaattaa 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  21989419 accatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaacttaaattaa 21989518  T
Q  101 ttaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  21989519 ttaagggaccaaaatgaatattggtaattatttgagggaccagatatataattaagcc 21989576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 167 - 303
Target Start/End: Complemental strand, 21696217 - 21696079
Alignment:
Q  167 aatagaagggcgatgttgaaaatgtttggcaacttaaagaattgatatgagataaaaataacttaaaga-accaatttattacaaacgtaaaacttaaaa 265  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  21696217 aatagaagggcgatgttgaaaatgtttgtcaacttaaagaattgatatgagataaaaataacttaaaaagaccaatttattacaaacgtaaaacttaaaa 21696118  T
Q  266 -actcataatgtaatttagcctaatttctactatttttg 303  Q
     |||||| |||||||||||||||||||||| ||||||||    
T  21696117 gactcatgatgtaatttagcctaatttctattatttttg 21696079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 21696548 - 21696642
Alignment:
Q  170 agaagggcgatgttgaaaatgtttggcaacttaaagaattgatatgagataaaaataacttaaagaaccaatttattacaaacgtaaaacttaaa 264  Q
    ||||||||  |||||||||||||||  ||||||||| ||||||||| |||||||||||||||||| |||||||| | |||||||| |||||||||    
T  21696548 agaagggcagtgttgaaaatgtttgttaacttaaaggattgatatgggataaaaataacttaaagtaccaatttgtcacaaacgtgaaacttaaa 21696642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 55327854 - 55327769
Alignment:
Q  180 tgttgaaaatgtttggcaacttaaagaattgatatgagataaaaataacttaaagaaccaatttattacaaacgtaaaacttaaaaa 266  Q
    |||||||||||||||  ||||||||| |||||||||||| |||||||| |||||| |  |||||||||||||||| |||||||||||    
T  55327854 tgttgaaaatgtttgttaacttaaaggattgatatgagacaaaaataatttaaag-attaatttattacaaacgtgaaacttaaaaa 55327769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 3169759 - 3169716
Alignment:
Q  221 aaaataacttaaagaaccaatttattacaaacgtaaaacttaaa 264  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  3169759 aaaataacttaaagaaccaatctattacaaaccttaaacttaaa 3169716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 24860169 - 24860326
Alignment:
Q  1 accatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatgaacgaatcttaattaaaggaccaaaatgaaactaaaattaa 100  Q
    ||||| ||||||||||||| ||||  ||||||  ||||||||||||| ||||||||||| ||| | ||||||||||||||||||||||  |||||| |||    
T  24860169 accatatgtgagacttaacgtttcaaaattaaaatttgacggaaagggcataaacgatggacggagcttaattaaaggaccaaaatgagtctaaaaataa 24860268  T
Q  101 ttaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24860269 ttaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 24860326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 24859099 - 24858944
Alignment:
Q  2 ccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatgaacgaatcttaattaaaggaccaaaatgaaactaaaattaat 101  Q
    |||||||||||||||||||||||||||| ||| ||| |||||||| ||| |||||||| ||| | ||||||||||||||||||||||| |||||| ||||    
T  24859099 ccatgtgtgagacttaacatttcttaataaatttttaacggaaagaacaaaaacgatggacggagcttaattaaaggaccaaaatgaacctaaaaataat 24859000  T
Q  102 taagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
    |||||||||||||||||||||| ||||||||||| || | |||||||||||||||||    
T  24858999 taagggaccaaaacgaattttgataattatttaa-ggcctagatatataattaagcc 24858944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 6220450 - 6220517
Alignment:
Q  197 aacttaaagaattgatatgagataaaaataacttaaagaaccaatttattacaaacgtaaaacttaaa 264  Q
    ||||||||||| | || || || |||||||||||||||||||||||| |||||||| | |||||||||    
T  6220450 aacttaaagaacttatgtgtgacaaaaataacttaaagaaccaatttgttacaaacctcaaacttaaa 6220517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 33184365 - 33184279
Alignment:
Q  200 ttaaagaattgatatgagataaaaataacttaaagaaccaatttattacaaacgtaaaacttaaa-aactcataatgtaatttagcct 286  Q
    |||||| |||||| || || |||||||||||||||||| ||| ||||||||| || |||||||||  |||| ||||||||||||||||    
T  33184365 ttaaaggattgatgtgggacaaaaataacttaaagaactaatatattacaaatgttaaacttaaaggactc-taatgtaatttagcct 33184279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 16913071 - 16913017
Alignment:
Q  197 aacttaaagaattgatatgagataaaaataacttaaagaaccaatttattacaaa 251  Q
    ||||||||||||| ||||| ||| |||||||||||||  |||| |||||||||||    
T  16913071 aacttaaagaatttatatgtgatcaaaataacttaaaagaccattttattacaaa 16913017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 27052684 - 27052728
Alignment:
Q  220 aaaaataacttaaagaaccaatttattacaaacgtaaaacttaaa 264  Q
    ||||||||||||||||| |||| |||||||||| | |||||||||    
T  27052684 aaaaataacttaaagaatcaatctattacaaacctcaaacttaaa 27052728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 38061700 - 38061604
Alignment:
Q  171 gaagggcgatgttgaaaatgtttggcaacttaaagaattgatatgagataaaaataacttaaagaaccaatttattacaaacgtaaaacttaaaaac 267  Q
    ||||||| ||||||||||  |||| |||| ||||| | |||||||||| ||||||||||||||   | |||||||||||||||||||||||||||||    
T  38061700 gaagggcaatgttgaaaacatttgtcaacctaaaggaatgatatgagacaaaaataacttaaatggctaatttattacaaacgtaaaacttaaaaac 38061604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 23662170 - 23662213
Alignment:
Q  221 aaaataacttaaagaaccaatttattacaaacgtaaaacttaaa 264  Q
    |||||||||||||| ||||||||||||||||| | |||||||||    
T  23662170 aaaataacttaaaggaccaatttattacaaacctcaaacttaaa 23662213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 23796418 - 23796375
Alignment:
Q  221 aaaataacttaaagaaccaatttattacaaacgtaaaacttaaa 264  Q
    |||||||||||||| ||||||||||||||||| | |||||||||    
T  23796418 aaaataacttaaaggaccaatttattacaaacctcaaacttaaa 23796375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 13170043 - 13169999
Alignment:
Q  221 aaaataacttaaagaaccaatttattacaaacgtaaaacttaaaaa 266  Q
    ||||||||||||||| |||||||||||||||| | |||||||||||    
T  13170043 aaaataacttaaaga-ccaatttattacaaacctcaaacttaaaaa 13169999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 17400591 - 17400550
Alignment:
Q  221 aaaataacttaaagaaccaatttattacaaacgtaaaactta 262  Q
    ||||||||||||||||||||||||||||| || | |||||||    
T  17400591 aaaataacttaaagaaccaatttattacacacctcaaactta 17400550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 2377332 - 2377380
Alignment:
Q  217 gataaaaataacttaaagaaccaatttattacaaacgtaaaacttaaaa 265  Q
    ||||||||||||||||||||| ||| | |||||||| | ||||||||||    
T  2377332 gataaaaataacttaaagaactaatcttttacaaacttcaaacttaaaa 2377380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 28559282 - 28559238
Alignment:
Q  220 aaaaataacttaaagaaccaatttattacaaacgtaaaacttaaa 264  Q
    ||||||||||||||| |||||| | |||||||||| |||||||||    
T  28559282 aaaaataacttaaaggaccaatctgttacaaacgtcaaacttaaa 28559238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 29379984 - 29380055
Alignment:
Q  221 aaaataacttaaagaaccaatttattacaaacgtaaaacttaaa-aactcataatgtaatttagcctaattt 291  Q
    |||||||||||||  ||||||||||||||||| | ||||||||| ||||||   ||||||||||||||||||    
T  29379984 aaaataacttaaatgaccaatttattacaaacctcaaacttaaagaactcacggtgtaatttagcctaattt 29380055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 28240793 - 28240879
Alignment:
Q  72 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
    ||||||||||||||||  || ||||||||| | |||||||||   || |||  ||||||||||||||||||  ||| ||||||||||    
T  28240793 ttaaaggaccaaaatgggacgaaaattaataaggggaccaaattaaaatttcataattatttaagggaccatttatgtaattaagcc 28240879  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 2469945 - 2469871
Alignment:
Q  221 aaaataacttaaagaaccaatttattacaaacgtaaaacttaaa-aactcataatgtaatttagcctaatttcta 294  Q
    ||||||||||||||||||||| |||||||||| | |||||||||  | | ||| |||||||||||||| ||||||    
T  2469945 aaaataacttaaagaaccaatctattacaaacctcaaacttaaaggagtgatagtgtaatttagcctattttcta 2469871  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 11384278 - 11384192
Alignment:
Q  72 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
    |||||||||| ||||| ||| ||||||| | | |||||||||  ||| | |  ||||||||||||||||||  ||||||||||||||    
T  11384278 ttaaaggaccgaaatggaacgaaaattattaatgggaccaaattgaaatctcataattatttaagggaccatttatataattaagcc 11384192  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 44491805 - 44491719
Alignment:
Q  72 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
    |||||||||||||||||  | ||||||||| | |||||||||  ||| | |  ||||||||||||||||||  ||| ||||||||||    
T  44491805 ttaaaggaccaaaatgaggcgaaaattaataatgggaccaaattgaaatctcataattatttaagggaccatttatgtaattaagcc 44491719  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 53863610 - 53863680
Alignment:
Q  221 aaaataacttaaagaaccaatttattacaaacgtaaaacttaaa-aactcataatgtaatttagcctaatt 290  Q
    |||||||||||||  |||||| |||||||||| | |||||||||  |||||| |||||||||| |||||||    
T  53863610 aaaataacttaaacgaccaatctattacaaacttgaaacttaaaggactcatgatgtaatttaacctaatt 53863680  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 25055927 - 25055866
Alignment:
Q  221 aaaataacttaaagaaccaatttattacaaacgtaaaacttaaaaactcataatgtaattta 282  Q
    |||||||||||||| || ||| |||||||||| | |||||||||||  | ||||||||||||    
T  25055927 aaaataacttaaaggacaaatctattacaaacctcaaacttaaaaatccgtaatgtaattta 25055866  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 25056187 - 25056255
Alignment:
Q  221 aaaataacttaaagaaccaatttattacaaacgtaaaacttaaaa-actcataatgtaatttagcctaa 288  Q
    |||||||||||||  |||||||| |||||||| | |||||||||| |||| |  |||||||||||||||    
T  25056187 aaaataacttaaaagaccaatttgttacaaacctcaaacttaaaagactcctggtgtaatttagcctaa 25056255  T

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Target: scaffold0625 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 8000 - 8062
Alignment:
Q  96 attaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
    ||||||||||||||||||  ||| |||  |||||||||||||||||| | || ||||||||||    
T  8000 attaattaagggaccaaagtgaaatttcataattatttaagggaccaaagatgtaattaagcc 8062  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 18993697 - 18993635
Alignment:
Q  96 attaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
    ||||||||||||||||||  ||| |||  |||||||||||||||||| | || ||||||||||    
T  18993697 attaattaagggaccaaagtgaaatttcataattatttaagggaccaaagatgtaattaagcc 18993635  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 6694577 - 6694508
Alignment:
Q  221 aaaataacttaaagaaccaatttattacaaacgtaaaacttaaa-aactcataatgtaatttagcctaat 289  Q
    |||||||||||||  ||||||||||||||||| | ||||||||| ||| | | |||||||||| ||||||    
T  6694577 aaaataacttaaaagaccaatttattacaaacctcaaacttaaagaacgcctgatgtaatttaccctaat 6694508  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 48678058 - 48678144
Alignment:
Q  72 ttaaaggaccaaaatgaaactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 158  Q
    ||||| |||||||||| | | ||||||||| ||||||||||| |||| | |  ||||||||||||| ||||  |||||||| |||||    
T  48678058 ttaaatgaccaaaatggagcgaaaattaataaagggaccaaatcgaaatctcataattatttaaggaaccaattatataataaagcc 48678144  T

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