View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8366_low_11 (Length: 275)

Name: NF8366_low_11
Description: NF8366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8366_low_11
NF8366_low_11
[»] chr8 (11 HSPs)
chr8 (17-223)||(19430622-19430826)
chr8 (17-223)||(19566771-19566975)
chr8 (17-223)||(19436064-19436268)
chr8 (17-223)||(19572213-19572417)
chr8 (17-223)||(13584759-13584968)
chr8 (17-224)||(33616063-33616267)
chr8 (17-224)||(31031149-31031350)
chr8 (40-79)||(21641298-21641337)
chr8 (40-79)||(24885260-24885299)
chr8 (40-79)||(42514020-42514059)
chr8 (42-79)||(17955306-17955343)
[»] chr3 (20 HSPs)
chr3 (17-223)||(13022638-13022842)
chr3 (17-223)||(33088616-33088820)
chr3 (17-223)||(53120110-53120314)
chr3 (17-223)||(38436270-38436474)
chr3 (44-152)||(26962640-26962748)
chr3 (17-175)||(20811001-20811159)
chr3 (23-152)||(26929307-26929436)
chr3 (73-152)||(11777219-11777298)
chr3 (60-152)||(6025709-6025801)
chr3 (36-111)||(2616921-2616996)
chr3 (40-79)||(3476364-3476403)
chr3 (40-79)||(4117122-4117161)
chr3 (40-79)||(54271255-54271294)
chr3 (40-79)||(30338272-30338311)
chr3 (40-79)||(30341376-30341415)
chr3 (23-105)||(27604568-27604650)
chr3 (40-79)||(3481821-3481860)
chr3 (40-79)||(17358502-17358541)
chr3 (36-75)||(25023431-25023470)
chr3 (186-223)||(3448722-3448759)
[»] chr4 (15 HSPs)
chr4 (17-224)||(10119805-10120010)
chr4 (32-223)||(653592-653782)
chr4 (17-223)||(24490683-24490882)
chr4 (48-152)||(10318247-10318350)
chr4 (40-82)||(9763442-9763484)
chr4 (36-146)||(15451783-15451893)
chr4 (40-79)||(13711306-13711345)
chr4 (40-79)||(41393796-41393835)
chr4 (23-79)||(53798247-53798304)
chr4 (17-85)||(30563830-30563898)
chr4 (42-77)||(4206980-4207015)
chr4 (29-148)||(15499238-15499357)
chr4 (43-85)||(17682359-17682402)
chr4 (40-79)||(47045792-47045830)
chr4 (39-148)||(17360085-17360194)
[»] chr6 (19 HSPs)
chr6 (17-223)||(19478727-19478931)
chr6 (17-223)||(17289607-17289808)
chr6 (17-175)||(10485688-10485844)
chr6 (21-152)||(17280926-17281057)
chr6 (53-152)||(3902847-3902946)
chr6 (17-152)||(13660386-13660520)
chr6 (23-131)||(28696923-28697034)
chr6 (60-149)||(29326228-29326317)
chr6 (68-168)||(11956114-11956212)
chr6 (116-175)||(14450642-14450701)
chr6 (28-105)||(22713936-22714013)
chr6 (40-79)||(34142717-34142756)
chr6 (40-79)||(34155333-34155372)
chr6 (40-79)||(34376400-34376439)
chr6 (40-79)||(2817573-2817612)
chr6 (40-79)||(31982115-31982154)
chr6 (40-72)||(6727956-6727988)
chr6 (40-79)||(24190827-24190866)
chr6 (29-81)||(20081660-20081712)
[»] chr1 (15 HSPs)
chr1 (17-223)||(13891394-13891598)
chr1 (17-223)||(38734715-38734919)
chr1 (17-223)||(26650428-26650631)
chr1 (17-224)||(10106630-10106836)
chr1 (40-223)||(31289367-31289547)
chr1 (23-225)||(39746672-39746872)
chr1 (77-223)||(14582397-14582541)
chr1 (17-118)||(19406284-19406385)
chr1 (17-175)||(12179290-12179449)
chr1 (127-223)||(5602170-5602264)
chr1 (40-79)||(48246144-48246183)
chr1 (24-106)||(14724903-14724985)
chr1 (40-78)||(5730707-5730745)
chr1 (40-75)||(3585237-3585272)
chr1 (40-78)||(29825877-29825915)
[»] chr2 (5 HSPs)
chr2 (24-223)||(42915159-42915356)
chr2 (17-223)||(5089667-5089872)
chr2 (57-151)||(43111535-43111629)
chr2 (29-118)||(39959774-39959863)
chr2 (36-106)||(44683721-44683791)
[»] chr5 (9 HSPs)
chr5 (17-223)||(13581981-13582186)
chr5 (17-224)||(14374713-14374918)
chr5 (23-223)||(7805668-7805867)
chr5 (24-148)||(9361776-9361898)
chr5 (31-111)||(31987350-31987430)
chr5 (40-79)||(24776231-24776270)
chr5 (40-79)||(36254453-36254492)
chr5 (40-79)||(24770777-24770816)
chr5 (40-68)||(1413258-1413286)
[»] chr7 (20 HSPs)
chr7 (17-223)||(24528979-24529183)
chr7 (17-223)||(28291842-28292046)
chr7 (17-223)||(7357923-7358127)
chr7 (18-223)||(33226916-33227113)
chr7 (74-223)||(9973915-9974062)
chr7 (63-152)||(47762348-47762436)
chr7 (40-79)||(16538845-16538884)
chr7 (40-79)||(16626778-16626817)
chr7 (40-79)||(17496036-17496075)
chr7 (40-79)||(17557139-17557178)
chr7 (40-79)||(43893478-43893517)
chr7 (40-79)||(12935020-12935059)
chr7 (48-106)||(21235492-21235550)
chr7 (186-223)||(10437419-10437456)
chr7 (186-223)||(10451129-10451166)
chr7 (43-79)||(21080493-21080529)
chr7 (47-79)||(42572543-42572575)
chr7 (40-79)||(2234124-2234163)
chr7 (40-79)||(19309048-19309087)
chr7 (40-79)||(32212137-32212176)
[»] scaffold0011 (2 HSPs)
scaffold0011 (17-223)||(2215-2420)
scaffold0011 (49-223)||(7501-7674)
[»] scaffold0132 (2 HSPs)
scaffold0132 (41-223)||(2421-2601)
scaffold0132 (41-223)||(10381-10561)
[»] scaffold0067 (1 HSPs)
scaffold0067 (17-175)||(33349-33503)
[»] scaffold0166 (2 HSPs)
scaffold0166 (40-79)||(13158-13197)
scaffold0166 (40-79)||(18615-18654)
[»] scaffold0594 (1 HSPs)
scaffold0594 (40-77)||(8708-8745)
[»] scaffold0060 (1 HSPs)
scaffold0060 (40-72)||(37591-37623)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 19430622 - 19430826
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19430622 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtatcccaagggcacacccttggaggtcactctacccttatataaacactttctagttggt 19430721  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||       || ||||||||||||||||||||| |||||||||    
T  19430722 gtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttatattgtg--tttttcttatccaattttctcactagatttaactagtgt 19430819  T
Q  217 tccaaca 223  Q
    |||||||    
T  19430820 tccaaca 19430826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 19566771 - 19566975
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19566771 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtatcccaagggcacacccttggaggtcactctacccttatataaacactttctagttggt 19566870  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||       || ||||||||||||||||||||| |||||||||    
T  19566871 gtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttatattgtg--tttttcttatccaattttctcactagatttaactagtgt 19566968  T
Q  217 tccaaca 223  Q
    |||||||    
T  19566969 tccaaca 19566975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 19436064 - 19436268
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  19436064 tatatgtttttgtaagcgttcaccagttcacaaaagtgggtaccccaagggcacacccttggaggtcactttacccttatataaacactttctagttggt 19436163  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||       || ||||||||||||||||||||| |||||||||    
T  19436164 gtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttatattgtg--tttttcttatccaattttctcactagatttaactagtgt 19436261  T
Q  217 tccaaca 223  Q
    |||||||    
T  19436262 tccaaca 19436268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 19572213 - 19572417
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  19572213 tatatgtttttgtaagcgttcaccagttcacaaaagtgggtaccccaagggcacacccttggaggtcactttacccttatataaacactttctagttggt 19572312  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||       || ||||||||||||||||||||| |||||||||    
T  19572313 gtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttatattgtg--tttttcttatccaattttctcactagatttaactagtgt 19572410  T
Q  217 tccaaca 223  Q
    |||||||    
T  19572411 tccaaca 19572417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 13584759 - 13584968
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||    
T  13584759 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggatgtcactctacccgtatataaacactttctagttggt 13584858  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtg---nnnnnnnctcatccaattttctcactagattgaactag 213  Q
    ||||||||||||||| |||||||||||| ||||||  |||||||| |||||||||||||          || ||||||||||||||||||||| ||||||    
T  13584859 gtggctcaccaatgtgggacatttttaaatcacacgctcacactaattcttatattgtgttttttttttcttatccaattttctcactagatttaactag 13584958  T
Q  214 tgttccaaca 223  Q
    ||||||||||    
T  13584959 tgttccaaca 13584968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 33616267 - 33616063
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  33616267 tatatgtttttgtaagcgttcatccgttcataaaagtgggtaccc-aagggcacacccttggaggttactctacccttatataaacactttctagttggt 33616169  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    |||||||||||||||  |||||||||||| |||| | |||||||||||||||||||||        || ||||||||||||||||||||| ||||| |||    
T  33616168 gtggctcaccaatgtgagacatttttaagccacatactcacactagttcttatattgt--atttttcttatccaattttctcactagatttaactaatgt 33616071  T
Q  217 tccaacat 224  Q
    ||||||||    
T  33616070 tccaacat 33616063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 31031149 - 31031350
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||  ||||||||||||    
T  31031149 tatatgtttttgtaagcgttcac--gttcacaaaagtgggtaccccaagggcacatccttggaggtcactctacccttatatatac--tttctagttggt 31031244  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||||||||| ||||       || |||||||||||||| |||||| |||||||||    
T  31031245 gtggctcaccaatgtgagacatttttaagtcacacactcacactagttcttataatgtg--tttttcttatccaattttctcattagatttaactagtgt 31031342  T
Q  217 tccaacat 224  Q
    ||||||||    
T  31031343 tccaacat 31031350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 21641337 - 21641298
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  21641337 ccgttcacaaaagtggataccccaagggcacacccttgga 21641298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 24885260 - 24885299
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  24885260 ccgttcacaaaagtgggtaccccaagggtacacccttgga 24885299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 42514059 - 42514020
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  42514059 ccgttcacaaaagtgggtaccccaaggacacacccttgga 42514020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 17955343 - 17955306
Alignment:
Q  42 gttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  17955343 gttcacaaaagtgtgtaccccaagggcacacccgtgga 17955306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 13022638 - 13022842
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13022638 tatatctttttgtaagcgttcacccgttcacaaaagtgggtaccccaaggtcacacccttggaggtcactcttcccttatataaacactttctaattggt 13022737  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||       || ||||||||||||||||||||| |||||||||    
T  13022738 gtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttatattgtg--tttttcttatccaattttctcactagatttaactagtgt 13022835  T
Q  217 tccaaca 223  Q
    |||||||    
T  13022836 tccaaca 13022842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 33088820 - 33088616
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33088820 tatatgtttttgtaagcgttcacccgtttataaaagtgggtaccccaagggcacacccttggaggtcactctacccttatataaacactttctagttggt 33088721  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
     |||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| ||       || ||||||||||||||||||||| |||||||||    
T  33088720 ttggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattatg--tttttcttatccaattttctcactagatttaactagtgt 33088623  T
Q  217 tccaaca 223  Q
    |||||||    
T  33088622 tccaaca 33088616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 53120110 - 53120314
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  53120110 tatatatttttgtaagcgttcacctgttcacaaaagtgggtaccccaagggcacacccttggaggtcactgtacccttatataaacactttctagttggt 53120209  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||| || |||       || ||||||||||||||||||||| |||||||||    
T  53120210 gtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacatcgtg--tttttcttatccaattttctcactagatttaactagtgt 53120307  T
Q  217 tccaaca 223  Q
    |||||||    
T  53120308 tccaaca 53120314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 38436474 - 38436270
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||||||| |||||||||||||||||| |||||| |    
T  38436474 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccctaagagcacacctttggtggtcactctacccttatataaacactttttagttgat 38436375  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||||||||||| |||||||||||||||||||  ||||||||||||||| ||||||       || ||||||||||||||||||||| |||| |||     
T  38436374 gtggctcaccaatgtgggacatttttaagtcacacgctcacactagttcttacattgtg--tttttcttatccaattttctcactagatttaactggtgc 38436277  T
Q  217 tccaaca 223  Q
    |||||||    
T  38436276 tccaaca 38436270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 26962640 - 26962748
Alignment:
Q  44 tcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggacattttta 143  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||| ||||||    
T  26962640 tcacaaaagtgggtaccccaagggcacacccttgaaggtcactctacccttatataaacactttctagttggtgtggctcaccaatgtgagactttttta 26962739  T
Q  144 agtcacaca 152  Q
    |||||||||    
T  26962740 agtcacaca 26962748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 20811001 - 20811159
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacc-cttggaggtcactcttcccttatataaacactttctagttgg 115  Q
    ||||||||||||||||||||||||||| || || ||||||||||||||||| ||||  |||||| |||||||| || ||||||||||||||| ||||||     
T  20811001 tatatgtttttgtaagcgttcacccgtgcaaaagagtgggtaccccaaggg-acacatcttggaagtcactctacctttatataaacactttttagttga 20811099  T
Q  116 tgtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtg 175  Q
    ||||| | |||||||| |||||||||||||||||||| ||||||||||||||| ||||||    
T  20811100 tgtggtttaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtg 20811159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 26929307 - 26929436
Alignment:
Q  23 tttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggct 122  Q
    ||||| |||||| | |||||||| |||||||||||||||||||||||||| |||||||||||| |  ||||||||||||||||| |||||||||||  ||    
T  26929307 tttttctaagcgcttacccgttcgcaaaagtgggtaccccaagggcacacacttggaggtcaccccacccttatataaacacttgctagttggtgtaact 26929406  T
Q  123 caccaatgttggacatttttaagtcacaca 152  Q
    |||||||||   ||||||||||||||||||    
T  26929407 caccaatgtgaaacatttttaagtcacaca 26929436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 11777219 - 11777298
Alignment:
Q  73 ccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggacatttttaagtcacaca 152  Q
    ||||||||||||| || ||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  11777219 ccttggaggtcaccctacccttatataaacacttgctagttagtgtggctcaccaatgtgggacatttttaagtcacaca 11777298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 6025709 - 6025801
Alignment:
Q  60 cccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggacatttttaagtcacaca 152  Q
    |||||||||||| ||||||||||||| |   |||||||||||||||| |||||| ||||| |||||||||||  ||||||||||| |||||||    
T  6025709 cccaagggcacatccttggaggtcaccccatccttatataaacacttgctagttagtgtgactcaccaatgtgagacatttttaaatcacaca 6025801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 2616996 - 2616921
Alignment:
Q  36 tcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctag 111  Q
    |||||||||| ||||||||||||||||||||||||||| ||| ||| ||||| || ||||||||||||||| ||||    
T  2616996 tcacccgttcgcaaaagtgggtaccccaagggcacaccgttgtaggccactcctcacttatataaacacttactag 2616921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 3476403 - 3476364
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3476403 ccgttcacaaaagtgggtaccccaagggcacacccttgga 3476364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 4117161 - 4117122
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4117161 ccgttcacaaaagtgggtaccccaagggcacacccttgga 4117122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 54271255 - 54271294
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  54271255 ccgttcacaaaagtgggtaccccaagggcacacccttgga 54271294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 30338311 - 30338272
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  30338311 ccgttcacaaaagtgtgtaccccaagggcacacccttgga 30338272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 30341415 - 30341376
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  30341415 ccgttcacaaaagtgtgtaccccaagggcacacccttgga 30341376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 27604650 - 27604568
Alignment:
Q  23 tttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacact 105  Q
    |||| ||||||| ||  ||||| |||||||||||| || |||||| |||||||||||||||||   || ||||||||||||||    
T  27604650 ttttcgtaagcgctcttccgtttacaaaagtgggtgccacaagggaacacccttggaggtcacctctcacttatataaacact 27604568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 3481860 - 3481821
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  3481860 ccgttcacagaagtggataccccaagggcacacccttgga 3481821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 17358502 - 17358541
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  17358502 ccgttcacaaaagtgtgtaccccaaggggacacccttgga 17358541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 25023470 - 25023431
Alignment:
Q  36 tcacccgttcacaaaagtgggtaccccaagggcacaccct 75  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  25023470 tcacccgttcgcaaaagtgggtatcccaagggcacaccct 25023431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 3448722 - 3448759
Alignment:
Q  186 atccaattttctcactagattgaactagtgttccaaca 223  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  3448722 atccaattttctcactagatttaactagtgttcaaaca 3448759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 10120010 - 10119805
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  10120010 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggtacacccttggaggtcactctacccttatataaacactttctagttggt 10119911  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||       || ||||||||||||||| ||||| |||||||||    
T  10119910 gtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtg--tttttcttatccaattttctcacgagattcaactagtgt 10119813  T
Q  217 tccaacat 224  Q
    ||||||||    
T  10119812 tccaacat 10119805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 653592 - 653782
Alignment:
Q  32 gcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgt 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || ||||||||    
T  653592 gcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacacttactagttggggtgactaaccaatgt 653691  T
Q  132 tggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgttccaaca 223  Q
     |||||||||||||||||| || ||||||||||||||| | |||       |||||||||||||||||||||||| ||||||||||||||||    
T  653692 gggacatttttaagtcacataaccacactagttcttatgtagtg-attattctcatccaattttctcactagattaaactagtgttccaaca 653782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 24490683 - 24490882
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    ||||||||||| |||| | |||||||||| |||| || |||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  24490683 tatatgtttttctaagtgctcacccgttcgcaaatgtaggtacctcaagggcacacccttggaggtcactctacccttatataaacacttgctagttggt 24490782  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||| ||||| | |||||||||||||| |||    |||||||||||||| ||||||       || ||||||||||||||||||||| |||||||||    
T  24490783 gtggctctccaatatgggacatttttaagttaca----cacactagttcttacattgtg--tttttct-atccaattttctcactagatttaactagtgt 24490875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 10318350 - 10318247
Alignment:
Q  48 aaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggacatttttaagtc 147  Q
    ||||||||||||||||||| |||||||||||||||||  |  ||||||||||| |||||  |||||||||||||||| ||||||  ||||||||||| ||    
T  10318350 aaaagtgggtaccccaagg-cacacccttggaggtcatcccacccttatataatcacttgttagttggtgtggctcatcaatgtgagacatttttaaatc 10318252  T
Q  148 acaca 152  Q
    |||||    
T  10318251 acaca 10318247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 9763484 - 9763442
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttggaggt 82  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9763484 ccgttcacaaaagtgggtaccccaagggcacacccttggaggt 9763442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 15451783 - 15451893
Alignment:
Q  36 tcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttgga 135  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||| || ||  | ||||||||||||||| |||| | || |  | | ||||||| |||    
T  15451783 tcacccgttcgcaaaagtgggtaccccaagggcacacccttttaggccattccccacttatataaacacttactaggtagtatcaccctccaatgtggga 15451882  T
Q  136 catttttaagt 146  Q
    |||||||||||    
T  15451883 catttttaagt 15451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 13711306 - 13711345
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13711306 ccgttcacaaaagtgggtaccccaagggcacacccttgga 13711345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 41393796 - 41393835
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41393796 ccgttcacaaaagtgggtaccccaagggcacacccttgga 41393835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 53798247 - 53798304
Alignment:
Q  23 tttttgtaagcgttcac-ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    |||||| |||||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  53798247 tttttgcaagcgttcactccgttcacaaaagtgtgtaccccaaaggcacacccttgga 53798304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 30563898 - 30563830
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcac 85  Q
    ||||| ||||| ||||||  |||| ||||  |||||||| |||||||||||||||||||||||||||||    
T  30563898 tatatatttttctaagcgcgcacctgttcgtaaaagtggataccccaagggcacacccttggaggtcac 30563830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 4206980 - 4207015
Alignment:
Q  42 gttcacaaaagtgggtaccccaagggcacacccttg 77  Q
    ||||||||||||||||||||||||||||||||||||    
T  4206980 gttcacaaaagtgggtaccccaagggcacacccttg 4207015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 15499238 - 15499357
Alignment:
Q  29 taagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaa 128  Q
    |||| ||| ||||||||  ||||||||||||||||||||||||| |||  ||| || ||  | ||||||||||||||| |||  | || | || | ||||    
T  15499238 taagtgtttacccgttcgtaaaagtgggtaccccaagggcacactcttttaggccattccccacttatataaacacttactaagtagtatcgccctccaa 15499337  T
Q  129 tgttggacatttttaagtca 148  Q
    ||| ||||||||||||||||    
T  15499338 tgtgggacatttttaagtca 15499357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 17682402 - 17682359
Alignment:
Q  43 ttcacaaaagtgggtaccccaagggcaca-cccttggaggtcac 85  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  17682402 ttcacaaaagtgggtaccccaagggcaaatcccttggaggtcac 17682359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 47045830 - 47045792
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  47045830 ccgttcacaaaagtgggta-cccaagggcacacccttgga 47045792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 17360085 - 17360194
Alignment:
Q  39 cccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggacat 138  Q
    |||||||  |||||||||||||||||||||||||| ||||| | ||| |  |  ||||||||||| || |||| | || || |||  |||||| ||||||    
T  17360085 cccgttcgtaaaagtgggtaccccaagggcacacctttggaagccaccccccatttatataaacatttactagatagtatgtctcttcaatgtaggacat 17360184  T
Q  139 ttttaagtca 148  Q
    | ||||||||    
T  17360185 tcttaagtca 17360194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 9e-79; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 19478727 - 19478931
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  19478727 tatatatttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggttactctacccttatataaacactttctagttggt 19478826  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||       || ||||||||||||||||||||| |||||||||    
T  19478827 gtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtg--tttttcttatccaattttctcactagattcaactagtgt 19478924  T
Q  217 tccaaca 223  Q
    |||||||    
T  19478925 tccaaca 19478931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 17289808 - 17289607
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||| ||||| |||| ||||||||||||  ||||||||||| ||||||| |||||||| ||||||||||||||||| || ||||||    
T  17289808 tatatgtttttgtaagcgctcacctgttcgcaaaagtgggtagtccaagggcacatccttggatgtcactctacccttatataaacacttgcttgttggt 17289709  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||||||||| ||||||       || ||||||||||||||||||||| |||||||||    
T  17289708 gtggctcaccaatgtgggacatttttaagtcacaca--cacactagttcttacattgtg--tttttct-atccaattttctcactagattcaactagtgt 17289614  T
Q  217 tccaaca 223  Q
    |||||||    
T  17289613 tccaaca 17289607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 10485688 - 10485844
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    ||||||||||| |||||| |||||  ||| ||||||| |||||| |||||||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  10485688 tatatgtttttctaagcgctcacctattcgcaaaagtaggtacctcaagggcacacccttggatgtcactctacccttatataaacacttgctagttggt 10485787  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtg 175  Q
    ||||||||||||||| | ||||||||||||| ||||  |||||||||||||| ||||||    
T  10485788 gtggctcaccaatgtggaacatttttaagtctcaca--cacactagttcttacattgtg 10485844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 17281057 - 17280926
Alignment:
Q  21 tgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtgg 120  Q
    |||||||||||||| |||||||||  ||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||    
T  17281057 tgtttttgtaagcgctcacccgtttgcaaaagtgggtacgcgaagggcacacccttggaggtcactctacccttatataaacacttgctagttgatatgg 17280958  T
Q  121 ctcaccaatgttggacatttttaagtcacaca 152  Q
    |||||||||||   ||||||||||||||||||    
T  17280957 ctcaccaatgtgaaacatttttaagtcacaca 17280926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 3902847 - 3902946
Alignment:
Q  53 tgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggacatttttaagtcacaca 152  Q
    |||||||| |||||||||||||||||||||||| |  ||||||||||||||||| ||||||||||||  |||||||||| ||||||||||||||| ||||    
T  3902847 tgggtacctcaagggcacacccttggaggtcaccccacccttatataaacacttgctagttggtgtgattcaccaatgtaggacatttttaagtctcaca 3902946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 13660386 - 13660520
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    ||||||||||| |||| | || ||||||| |||||| || || |||||||||||||| ||||||||||  |  ||||||||||||||||| |||||| ||    
T  13660386 tatatgtttttctaagtgctctcccgttctcaaaag-ggatatcccaagggcacacctttggaggtcatcccacccttatataaacacttgctagttagt 13660484  T
Q  117 gtggctcaccaatgttggacatttttaagtcacaca 152  Q
    ||||||||||||| |  || ||||||||||||||||    
T  13660485 gtggctcaccaatataagatatttttaagtcacaca 13660520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 28697034 - 28696923
Alignment:
Q  23 tttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttat---ataaacactttctagttggtgtg 119  Q
    ||||| |||||| |||| |||| |||||||||||||||||||| |||||||||| |||||||| |  |||||||   |||||||||| |||||||||||     
T  28697034 tttttctaagcgctcactcgtttacaaaagtgggtaccccaagtgcacacccttagaggtcaccccacccttatataataaacacttgctagttggtgtt 28696935  T
Q  120 gctcaccaatgt 131  Q
    ||||||||||||    
T  28696934 gctcaccaatgt 28696923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 29326228 - 29326317
Alignment:
Q  60 cccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggacatttttaagtcac 149  Q
    ||||||| || ||||||||||||||| |  ||||||||||||||||| |||||||||||| |||||||||||  ||||||||||||||||    
T  29326228 cccaaggacatacccttggaggtcaccccacccttatataaacacttgctagttggtgtgcctcaccaatgtgagacatttttaagtcac 29326317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 11956212 - 11956114
Alignment:
Q  68 cacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggacatttttaagtcacacaatcacactagttctt 167  Q
    |||| ||||| ||||||| |  |||||||||||||||||||||||| |||||||||||| |||| | |||||||||||||| |||  |||||||||||||    
T  11956212 cacatccttgtaggtcaccccacccttatataaacactttctagttagtgtggctcacctatgtggaacatttttaagtcataca--cacactagttctt 11956115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 14450701 - 14450642
Alignment:
Q  116 tgtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtg 175  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||||||||| ||||||    
T  14450701 tgtggctcatcaatgtgggacatttttaagtcacacactcacactagttcttacattgtg 14450642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 22713936 - 22714013
Alignment:
Q  28 gtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacact 105  Q
    ||||||| |||||||||   |||| |||||||||||||| ||||||||| ||||||||||| | ||||||||||||||    
T  22713936 gtaagcgctcacccgtttgtaaaactgggtaccccaaggacacacccttagaggtcactctccacttatataaacact 22714013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 34142717 - 34142756
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34142717 ccgttcacaaaagtgggtaccccaagggcacacccttgga 34142756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 34155333 - 34155372
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34155333 ccgttcacaaaagtgggtaccccaagggcacacccttgga 34155372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 34376400 - 34376439
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34376400 ccgttcacaaaagtgggtaccccaagggcacacccttgga 34376439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 2817612 - 2817573
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  2817612 ccgttcacaaaagtgtgtaccccaagggcacacccttgga 2817573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 31982115 - 31982154
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  31982115 ccgttcacaaaagtgggtaccccaagggcacgcccttgga 31982154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 6727988 - 6727956
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacac 72  Q
    |||||||||||||||||||||||||||||||||    
T  6727988 ccgttcacaaaagtgggtaccccaagggcacac 6727956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 24190866 - 24190827
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  24190866 ccgttcccaaaagtgggtaccccaaggggacacccttgga 24190827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 20081660 - 20081712
Alignment:
Q  29 taagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggagg 81  Q
    |||||| ||||| ||||| |||||||||||||| ||||||||| |||| ||||    
T  20081660 taagcgctcacctgttcataaaagtgggtaccctaagggcacatccttagagg 20081712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 9e-79; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 13891394 - 13891598
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13891394 tatatgtttttgtaagcattcacccgttcacaaaagtgggtacctcaagggcacatccttggaggtcactcttcccttatataaacactttctagttggt 13891493  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||       || ||||||||||||||||||||| |||||||||    
T  13891494 gtggctcaccaatgtgggacatttttaagtcacacacttacactagttcttatattgtg--tttttcttatccaattttctcactagatttaactagtgt 13891591  T
Q  217 tccaaca 223  Q
    |||||||    
T  13891592 tccaaca 13891598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 38734715 - 38734919
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  38734715 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtatcctaagggcacacctttgaaggtcactctacccttatataaacactttctagttggt 38734814  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||       || ||||||||||||||||||||| |||||||||    
T  38734815 gtggctcaccaatatgggacatttttaagtcacacactcacactagttcttatattgtg--tttttcttatccaattttctcactagatttaactagtgt 38734912  T
Q  217 tccaaca 223  Q
    |||||||    
T  38734913 tccaaca 38734919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 26650631 - 26650428
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| |    
T  26650631 tatatatttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacatccttggaggtcactctacccttatat-aacactttctagttgat 26650533  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||       || ||||||||||||||||||||| |||||||||    
T  26650532 gtggctcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtg--tttttcttatccaattttctcactagatttaactagtgt 26650435  T
Q  217 tccaaca 223  Q
    |||||||    
T  26650434 tccaaca 26650428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 10106630 - 10106836
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||     
T  10106630 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactctccccttatataaacacttactagttggg 10106729  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||| || |||||||| ||||||||||||||||||||| ||||||||||| ||| | ||        ||||  ||||||||||||||||||||||||||||    
T  10106730 gtgactaaccaatgtgggacatttttaagtcacacaaccacactagttcctatgtagt-aattattctcaatcaattttctcactagattgaactagtgt 10106828  T
Q  217 tccaacat 224  Q
    ||||||||    
T  10106829 tccaacat 10106836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 40 - 223
Target Start/End: Original strand, 31289367 - 31289547
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggacatt 139  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31289367 ccgtttacaaaagtgggtaccctaagggcacacccttggaggtcactctacccttatataaacactttctagttggtgtggctcaccaatgtgggacatt 31289466  T
Q  140 tttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgttccaaca 223  Q
    ||||||||||||| ||||||||||||||| ||||||       || ||||||||||||||||||||| ||||||||||||||||    
T  31289467 tttaagtcacacactcacactagttcttacattgtg---ttttcttatccaattttctcactagattcaactagtgttccaaca 31289547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 39746872 - 39746672
Alignment:
Q  23 tttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggct 122  Q
    ||||||||||||||||| ||||||||||||||||||||  ||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  39746872 tttttgtaagcgttcactcgttcacaaaagtgggtaccttaagggcacatccttggaggttactctacccttatataaacactttctagttggtgtggct 39746773  T
Q  123 caccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgttccaac 222  Q
    ||||||| |   |||||||||||||||||| ||||||||||||||| ||||||       || ||||||||||||||||||||| |||||||||||||||    
T  39746772 caccaatatgaaacatttttaagtcacacactcacactagttcttacattgtg--tttttcttatccaattttctcactagattcaactagtgttccaac 39746675  T
Q  223 atg 225  Q
    |||    
T  39746674 atg 39746672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 14582397 - 14582541
Alignment:
Q  77 ggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgn 176  Q
    |||||||||||| |||||||||||| | |||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| ||||||     
T  14582397 ggaggtcactctacccttatataaaaaatttctagttggtgtggttcaccaatgtgggacatttttaagtcacacactcacactagttcttacattgtg- 14582495  T
Q  177 nnnnnnctcatccaattttctcactagattgaactagtgttccaaca 223  Q
          || ||||||||||||||||||||| ||||||||||||||||    
T  14582496 -tttttcttatccaattttctcactagatttaactagtgttccaaca 14582541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 19406385 - 19406284
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  19406385 tatatgtttttgtaagcgttcatccgttcacgaaagtgggtaccccaaaggcacacccttgggggtcactctacccttatataaacactttctagttggt 19406286  T
Q  117 gt 118  Q
    ||    
T  19406285 gt 19406284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 12179290 - 12179449
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtca-ctcttcccttatataaacactttctagttgg 115  Q
    ||||| ||||| |||| | |||| ||||||||| |||||||| ||||||||||||| |||| |||||| | |  ||||||||||||||||| ||||||||    
T  12179290 tatatatttttctaagtgctcactcgttcacaacagtgggtatcccaagggcacacacttgcaggtcatccccacccttatataaacacttgctagttgg 12179389  T
Q  116 t----gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtg 175  Q
    |    ||||||||||||||| ||| ||||||||||||||    |||||||||||||| ||||||    
T  12179390 tgtacgtggctcaccaatgtaggatatttttaagtcaca----cacactagttcttacattgtg 12179449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 5602264 - 5602170
Alignment:
Q  127 aatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgttccaaca 223  Q
    ||||| |||||||||||||||||||| ||||||||||||||| ||||||       || ||||||||||||||||| ||| ||||||||||||||||    
T  5602264 aatgtgggacatttttaagtcacacactcacactagttcttacattgtg--tttttcttatccaattttctcactaaattcaactagtgttccaaca 5602170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 48246183 - 48246144
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48246183 ccgttcacaaaagtgggtaccccaagggcacacccttgga 48246144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 14724903 - 14724985
Alignment:
Q  24 ttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactt 106  Q
    |||| |||||| |||||||||| |||||||||||||||||| |||||| | ||| ||||||| |  | |||||||||||||||    
T  14724903 ttttctaagcgctcacccgttcccaaaagtgggtaccccaatggcacatctttgtaggtcaccccccacttatataaacactt 14724985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 5730707 - 5730745
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgg 78  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  5730707 ccgttcacaaaagtgtgtaccccaagggcacacccttgg 5730745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 3585237 - 3585272
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacaccct 75  Q
    ||||||||||||||| ||||||||||||||||||||    
T  3585237 ccgttcacaaaagtgtgtaccccaagggcacaccct 3585272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 29825915 - 29825877
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgg 78  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  29825915 ccgttcacaaaagtgggtaccccaagggtagacccttgg 29825877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 6e-77; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 42915159 - 42915356
Alignment:
Q  24 ttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctc 123  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42915159 ttttgcaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactctacccttatataaacactttctagttggtgtggctc 42915258  T
Q  124 accaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgttccaaca 223  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| ||||||       || ||||||||||||||||||||| ||||||||||||||||    
T  42915259 accaatgtgggacatttttaagtcacacactcacactagttcttacattgtg--tttttcttatccaattttctcactagattcaactagtgttccaaca 42915356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 5089667 - 5089872
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||  |||||||||||||||||||| |||||    
T  5089667 tatatatttttgtaagcgttcacccgttcacaaaagtgggtacatcaagggcacacccttagaggtcactctatccttatataaacactttctaattggt 5089766  T
Q  117 gtggctcaccaatgttggaca-tttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtg 215  Q
    ||||||||||||||| ||||| |||||||||| | || ||||||||||||||| ||||||       || ||||||||||||||||| ||| ||||||||    
T  5089767 gtggctcaccaatgtgggacattttttaagtcccgcactcacactagttcttacattgtg--tttttcttatccaattttctcactaaattcaactagtg 5089864  T
Q  216 ttccaaca 223  Q
    || |||||    
T  5089865 tttcaaca 5089872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 43111629 - 43111535
Alignment:
Q  57 taccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggacatttttaagtcacac 151  Q
    |||||||| | |||||||||| ||||||| |  ||||||||||||||||| |||||||||||||||||| ||| | |||||||||||||||||||    
T  43111629 taccccaatgacacacccttgtaggtcaccccacccttatataaacacttgctagttggtgtggctcactaatatgggacatttttaagtcacac 43111535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 39959774 - 39959863
Alignment:
Q  29 taagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgt 118  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||| |  |||||||||||||| ||  ||||||||||    
T  39959774 taagcgttcacccgttcgcaaaagcgggtaccccaaggacacacccttggaggtcaccccacccttatataaacatttgttagttggtgt 39959863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 44683721 - 44683791
Alignment:
Q  36 tcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactt 106  Q
    |||||||||| ||||||| ||||||||||   |||| ||||| ||||||| || | |||||||||||||||    
T  44683721 tcacccgttcgcaaaagttggtaccccaaacacacatccttgtaggtcaccctccacttatataaacactt 44683791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 13582186 - 13581981
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  13582186 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacacttactagttggg 13582087  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||| || |||||||| |||||||||||||||||| || ||||||||||||||| | |||       ||||||||||||||||||||||||||||||||||    
T  13582086 gtgactaaccaatgtgggacatttttaagtcacataaccacactagttcttatgtagtg-attattctcatccaattttctcactagattgaactagtgt 13581988  T
Q  217 tccaaca 223  Q
    |||||||    
T  13581987 tccaaca 13581981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 14374713 - 14374918
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14374713 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggg 14374812  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||| || |||||||| ||||||||||||||||||||| ||||||||||||||  | |||       |||||||||  |||||||||||||||||||||||    
T  14374813 gtgactaaccaatgtgggacatttttaagtcacacaaccacactagttctta-gtagtg-cttattctcatccaaacttctcactagattgaactagtgt 14374910  T
Q  217 tccaacat 224  Q
    ||||||||    
T  14374911 tccaacat 14374918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 7805668 - 7805867
Alignment:
Q  23 tttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggct 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||    
T  7805668 tttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacacttactagttggggtgact 7805767  T
Q  123 caccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgttccaac 222  Q
     |||||||| ||||||||||||||||||||| ||||||||||| ||| | ||        ||||  ||||||||||||||||||||||||||||||||||    
T  7805768 aaccaatgtgggacatttttaagtcacacaaccacactagttcctatgtagt-aattatcctcaatcaattttctcactagattgaactagtgttccaac 7805866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 9361898 - 9361776
Alignment:
Q  24 ttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctc 123  Q
    |||| |||||||||| |||||  ||||||||| |||| ||||||||||||||||||  |||| || | |||||||||| |||| |||| | || || |||    
T  9361898 ttttctaagcgttcatccgtttgcaaaagtggataccacaagggcacacccttgga--tcaccctccacttatataaatacttactaggtagtatgtctc 9361801  T
Q  124 accaatgttggacatttttaagtca 148  Q
     ||||||| | ||||||||||||||    
T  9361800 tccaatgtggcacatttttaagtca 9361776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 31987350 - 31987430
Alignment:
Q  31 agcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctag 111  Q
    |||| |||| ||||| ||||| ||||||||||||||| ||| ||||||||||||| || | ||||||||||||||| ||||    
T  31987350 agcgctcactcgttcgcaaaaatgggtaccccaagggtacatccttggaggtcaccctccgcttatataaacacttactag 31987430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 24776270 - 24776231
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24776270 ccgttcacaaaagtgggtaccccaagggcacacccttgga 24776231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 36254453 - 36254492
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36254453 ccgttcacaaaagtgggtaccccaagggcacacccttgga 36254492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 24770816 - 24770777
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  24770816 ccgttaacaaaagtgggtaccccaagggcacacccttgga 24770777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 1413286 - 1413258
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggc 68  Q
    |||||||||||||||||||||||||||||    
T  1413286 ccgttcacaaaagtgggtaccccaagggc 1413258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 24528979 - 24529183
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24528979 tatatgtttttgcaagcgttcatccgttcataaaagtgggtaccccaaaggcacacccttggaggtcactctacccttatataaacactttctagttggt 24529078  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||       || ||||||||||||||||||||| |||||||||    
T  24529079 gtggctcaccaatgtaggatatttttaagtcacacactcacactagttcttatattatg--tttttcttatccaattttctcactagatttaactagtgt 24529176  T
Q  217 tccaaca 223  Q
    |||||||    
T  24529177 tccaaca 24529183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 28292046 - 28291842
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  28292046 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactatacccttatataaacactttctagttggt 28291947  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    || |||||||||| | |||||||||||||||||||  ||||||||||||||||||||||       || |||||||||||| | |||||| |||||||||    
T  28291946 gtagctcaccaatatgggacatttttaagtcacacgctcacactagttcttatattgtg--tttttcttatccaattttctaattagatttaactagtgt 28291849  T
Q  217 tccaaca 223  Q
    |||||||    
T  28291848 tccaaca 28291842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 7357923 - 7358127
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| |||||    
T  7357923 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtacctcaagggcacatccttggaggtcactctacccttatataaacactttctaattggt 7358022  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgt 216  Q
    ||||||||||||| | |||||||||||||||||||  ||||||||||||||  ||||||       || ||||||||||||||  ||||| |||||||||    
T  7358023 gtggctcaccaatatgggacatttttaagtcacacgctcacactagttcttgcattgtg--tttttcttatccaattttctcaaaagattcaactagtgt 7358120  T
Q  217 tccaaca 223  Q
    |||||||    
T  7358121 tccaaca 7358127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 33226916 - 33227113
Alignment:
Q  18 atatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtg 117  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  33226916 atatgtttttgtaagcgttcacccgttcacaaaagtgg-------aagggcacactcttggaggtcactctacccttatataaacactttctagttggtg 33227008  T
Q  118 tggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgtt 217  Q
    || ||||||||||| | |||||||||||||||||| ||||||||||||||| ||||||       || ||||||||||||||||||||| ||||||||||    
T  33227009 tgactcaccaatgtggaacatttttaagtcacacactcacactagttcttacattgtg-tttttccttatccaattttctcactagatttaactagtgtt 33227107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 9973915 - 9974062
Alignment:
Q  74 cttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattg 173  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||    
T  9973915 cttggaggtcactctacccttatattaacaatttctagttggtgtggctcaccaatgtgggacatttttaagtcacacactcacattagttcttacattg 9974014  T
Q  174 tgnnnnnnnctcatccaattttctcactagattgaactagtgttccaaca 223  Q
    ||       || ||||||||||||||||||||| ||||||||||||||||    
T  9974015 tg--tttttcttatccaattttctcactagattcaactagtgttccaaca 9974062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 47762348 - 47762436
Alignment:
Q  63 aagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggacatttttaagtcacaca 152  Q
    ||||||||| ||||||||||||| |  || ||||||||||| || |||||||||||||||||| ||||| | ||||||||||||||||||    
T  47762348 aagggcacatccttggaggtcaccca-cctttatataaacatttactagttggtgtggctcactaatgtggaacatttttaagtcacaca 47762436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 16538884 - 16538845
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16538884 ccgttcacaaaagtgggtaccccaagggcacacccttgga 16538845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 16626778 - 16626817
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16626778 ccgttcacaaaagtgggtaccccaagggcacacccttgga 16626817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 17496036 - 17496075
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17496036 ccgttcacaaaagtgggtaccccaagggcacacccttgga 17496075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 17557178 - 17557139
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17557178 ccgttcacaaaagtgggtaccccaagggcacacccttgga 17557139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 43893478 - 43893517
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43893478 ccgttcacaaaagtgggtaccccaagggcacacccttgga 43893517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 12935020 - 12935059
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  12935020 ccgttcacaaaagtgggtaccccaagggcacaccattgga 12935059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 21235550 - 21235492
Alignment:
Q  48 aaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactt 106  Q
    |||||||| ||||| ||||| ||||||||||||||||| | || |||||||||||||||    
T  21235550 aaaagtggatacccaaagggaacacccttggaggtcacccctcacttatataaacactt 21235492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 10437419 - 10437456
Alignment:
Q  186 atccaattttctcactagattgaactagtgttccaaca 223  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  10437419 atccaattttctcactagattcaactagtgttccaaca 10437456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 10451129 - 10451166
Alignment:
Q  186 atccaattttctcactagattgaactagtgttccaaca 223  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  10451129 atccaattttctcactagattcaactagtgttccaaca 10451166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 21080529 - 21080493
Alignment:
Q  43 ttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    |||||||||||| ||||||||||||||||||||||||    
T  21080529 ttcacaaaagtgtgtaccccaagggcacacccttgga 21080493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 42572543 - 42572575
Alignment:
Q  47 caaaagtgggtaccccaagggcacacccttgga 79  Q
    |||||||||||||||||||||||||||||||||    
T  42572543 caaaagtgggtaccccaagggcacacccttgga 42572575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 2234163 - 2234124
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  2234163 ccgttcacaaaagtgtgtaccccaagggaacacccttgga 2234124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 19309087 - 19309048
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  19309087 ccgttcacaaaagtaggtaccccaagggcacatccttgga 19309048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 32212176 - 32212137
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  32212176 ccgttcacaaaagtgggtaccccaagcacacacccttgga 32212137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 2215 - 2420
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  2215 tatatgtttttgtaagcgttcatccgttcacaaaagtgggtaccccaagggcacacccttggaggtcacaatacccttatataaacactttctagttggt 2314  T
Q  117 gtggctcaccaatgttggaca-tttttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtg 215  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||||||||||  ||||||       || |||||||||||||||||| || ||||||||    
T  2315 gtggctcaccaatgtgggacattttttaagtcacacactcacactagttctttcattgtg--tttttcttatccaattttctcactaggttcaactagtg 2412  T
Q  216 ttccaaca 223  Q
    ||||||||    
T  2413 ttccaaca 2420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 49 - 223
Target Start/End: Original strand, 7501 - 7674
Alignment:
Q  49 aaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggaca-tttttaagtc 147  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  7501 aaagtgggtaccccaagggcacacccttggaggtcacactacccttatataaacactttctagttggtgtggctcaccaatgtgggacattttttaagtc 7600  T
Q  148 acacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgttccaaca 223  Q
    ||||| ||||||||||||||  ||||||       || |||||||||||||||||| || ||||||||||||||||    
T  7601 acacactcacactagttctttcattgtg--tttttcttatccaattttctcactaggttcaactagtgttccaaca 7674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 2601 - 2421
Alignment:
Q  41 cgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggacattt 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  2601 cgttcacaaaagtgggtaccccaagggcacacccttggaggtcactctacccttatataaatactttctagttggtgtggctcaacaatgtgggacattt 2502  T
Q  141 ttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgttccaaca 223  Q
    |||||||||||| ||||||||||||||||||||||       || ||||||||||||||||||||| ||||||||||||||||    
T  2501 ttaagtcacacactcacactagttcttatattgtg--tttttcttatccaattttctcactagattcaactagtgttccaaca 2421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 10561 - 10381
Alignment:
Q  41 cgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggtgtggctcaccaatgttggacattt 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  10561 cgttcacaaaagtgggtaccccaagggcacacccttggaggtcactctacccttatataaatactttctagttggtgtggctcaacaatgtgggacattt 10462  T
Q  141 ttaagtcacacaatcacactagttcttatattgtgnnnnnnnctcatccaattttctcactagattgaactagtgttccaaca 223  Q
    |||||||||||| ||||||||||||||||||||||       || ||||||||||||||||||||| ||||||||||||||||    
T  10461 ttaagtcacacactcacactagttcttatattgtg--tttttcttatccaattttctcactagattcaactagtgttccaaca 10381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 33503 - 33349
Alignment:
Q  17 tatatgtttttgtaagcgttcacccgttcacaaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacactttctagttggt 116  Q
    ||||| ||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||| |  | ||||||||||||||| |||||||||    
T  33503 tatatatttttctaagcgctcacccgttcacaaaagtgggtatcccaatggcacacccttggagctcaccccactcttatataaacacttgctagttggt 33404  T
Q  117 gtggctcaccaatgttggacatttttaagtcacacaatcacactagttcttatattgtg 175  Q
    |||||||| |||||| ||||||||||||||||||    |||||||||||||| ||||||    
T  33403 gtggctcatcaatgtgggacatttttaagtcaca----cacactagttcttacattgtg 33349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 13197 - 13158
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13197 ccgttcacaaaagtgggtaccccaagggcacacccttgga 13158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 18654 - 18615
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttgga 79  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  18654 ccgttaacaaaagtgggtaccccaagggcacacccttgga 18615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 8745 - 8708
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacacccttg 77  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8745 ccgttcacaaaagtgggtaccccaagggcacacccttg 8708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 37591 - 37623
Alignment:
Q  40 ccgttcacaaaagtgggtaccccaagggcacac 72  Q
    |||||||||||||||||||||||||||||||||    
T  37591 ccgttcacaaaagtgggtaccccaagggcacac 37623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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