View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8366_low_14 (Length: 227)
Name: NF8366_low_14
Description: NF8366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8366_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39204971 - 39204745
Alignment:
| Q |
1 |
gattatgtttcattaattaaagacaaattatggattatgacaaagattaaatctttnnnnnnntgaaacttgtttgaactggaagaaagaagtgaaaaag |
100 |
Q |
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| T |
39204971 |
gattatgtttcattaattaaagataaattatggattatgacaaagattaaatctttaaaaaaatgaaacttgtttgaactggaagaaagaagtgaaaaag |
39204872 |
T |
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| Q |
101 |
ctaaaccagttgacttgactttgctaggttccttctaccagcactcttctttcacttgcaatttccattgaaacaatgcatcttgaggtatatgaaaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39204871 |
ctaaaccagttgacttgactttgctaggttccttctaccagcactcttctttcacttgcaatttccattgaaacaatgcatcttgaggtatatgaaaaag |
39204772 |
T |
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| Q |
201 |
tctcactctctttcttagtataatgac |
227 |
Q |
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||||||||||||||||||| ||||||| |
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| T |
39204771 |
tctcactctctttcttagtctaatgac |
39204745 |
T |
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