View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8366_low_2 (Length: 723)

Name: NF8366_low_2
Description: NF8366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8366_low_2
NF8366_low_2
[»] chr2 (8 HSPs)
chr2 (173-703)||(39125810-39126340)
chr2 (190-469)||(39131712-39132005)
chr2 (15-124)||(39125704-39125813)
chr2 (411-483)||(39503667-39503739)
chr2 (272-382)||(39470602-39470712)
chr2 (413-475)||(39139802-39139866)
chr2 (21-119)||(39470861-39470958)
chr2 (409-462)||(39470516-39470569)
[»] chr4 (2 HSPs)
chr4 (415-501)||(33152765-33152849)
chr4 (622-695)||(33153126-33153199)


Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 173 - 703
Target Start/End: Original strand, 39125810 - 39126340
Alignment:
Q  173 tctaaaatgtttaattggaaagaataaaattcaagatcaattaacagggtcatctttatctttggcttactgttctttctttctattgtatattgtttgt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39125810 tctaaaatgtttaattggaaagaataaaattcaagatcaattaacagggtcatctttatctttggcttactgttctttctttctattgtatattgtttgt 39125909  T
Q  273 ttttaatttctcaaaggcttaaacttgatatgcataaatgttttcatatacaaattagctatttagagtacatgccacacttttgtttgcaaattttatg 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39125910 ttttaatttctcaaaggcttaaacttgatatgcataaatgttttcatatacaaattagctatttagagtacatgccacacttttgtttgcaaattttatg 39126009  T
Q  373 taattagcttaatgcagtgtagttgtccaagagttatctctcatttgttaagagaaaattgaaatcttggccaatgcttggaaaatgaaataaacttcaa 472  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39126010 taattagcttgatgcagtgtagttgtccaagagttatctctcatttgttaagagaaaattgaaatcttggccaatgcttggaaaatgaaataaacttcaa 39126109  T
Q  473 atttgtatatctctctttagtctttatatatacattgttctannnnnnnaaatggtctgaggtgctttattttcttcacgtagtatttttgagttaatat 572  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39126110 atttgtatatctctctttagtctttatatatacattgttctatttttttaaatggtctgaggtgctttattttcttcacgtagtatttttgagttaatat 39126209  T
Q  573 ttagctcaatcttagttgaagttaactagaactttttatgtcactgtaccttgcagattttgcttagaatcatatctggaagttgcaacatatggaagtt 672  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39126210 ttagctcaatcttagttgaagttaactagaactttttatgtcactgtaccttgcagattttgcttagaatcatatctggaagttgcaacatatggaagtt 39126309  T
Q  673 gtttgattcatttgtgcatataataacttga 703  Q
    |||||||||||||||||||||||||||||||    
T  39126310 gtttgattcatttgtgcatataataacttga 39126340  T

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Target: chr2; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 190 - 469
Target Start/End: Original strand, 39131712 - 39132005
Alignment:
Q  190 gaaagaat-aaaattcaagatcaattaacagggtcatctttatctttggcttactgttctttcttt-----ctattgtatattgtttgtttttaatttct 283  Q
    |||||||| |||| ||| || |||||||||||||||||| ||||||||| | ||| ||||||||||     |||||||||||||||  ||||||||||||    
T  39131712 gaaagaatgaaaactcatgagcaattaacagggtcatctctatctttgggtcactattctttctttcctttctattgtatattgttcatttttaatttct 39131811  T
Q  284 caaaggcttaaacttgatatgcataaatgttttcatatacaaattagctatttagagtaca-tgccacacttttgtttgcaaattttatgtaattagctt 382  Q
    |||||||||||| |||||||||| ||| |||||||||| |||| ||| | ||||||||||| ||||||| ||||||| ||||| ||||||||||||||||    
T  39131812 caaaggcttaaatttgatatgcagaaacgttttcatatgcaaactagttttttagagtacattgccacagttttgttcgcaaagtttatgtaattagctt 39131911  T
Q  383 aatgcagt-------gtagttgtccaagagttatctctcatttgttaagagaaaattgaaatcttggccaatgcttggaaaatgaaataaactt 469  Q
     || |  |       | |||| ||||||||||||||||||||||||  |||||||||||||| ||||| ||| |||||||||||||||| ||||    
T  39131912 catacgcttgatgcagaagttctccaagagttatctctcatttgttcggagaaaattgaaattttggctaatacttggaaaatgaaatagactt 39132005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 39125704 - 39125813
Alignment:
Q  15 cagagaggcaaatagtgtttttactagaactggtgagtgtcatcatccaatatgcaacaacctaatatgtaaagatatctgctagcggaaacctgctaac 114  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39125704 cagagaggcaaatagtgtttttactagaaccggtgagtgtcatcatccaatatgcaacaacctaatatgtaaagatatgtgctagcggaaacctgctaac 39125803  T
Q  115 atgttctcta 124  Q
    ||||||||||    
T  39125804 atgttctcta 39125813  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 411 - 483
Target Start/End: Complemental strand, 39503739 - 39503667
Alignment:
Q  411 tctcatttgttaagagaaaattgaaatcttggccaatgcttggaaaatgaaataaacttcaaatttgtatatc 483  Q
    ||||||||||||||||||| |||  |||||||| |||||||||||||||||||| |||| ||||| |||||||    
T  39503739 tctcatttgttaagagaaatttggtatcttggctaatgcttggaaaatgaaatagactttaaattagtatatc 39503667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 272 - 382
Target Start/End: Complemental strand, 39470712 - 39470602
Alignment:
Q  272 tttttaatttctcaaaggcttaaacttgatatgca-taaatgttttcatatacaaattagctatttagagtacatgccacacttttgtttgcaaatttta 370  Q
    |||||||||||||||||||||||  |||||  | |  ||||||||||||| ||||| ||| ||||| ||||||||||||| ||||||||  |||  |||     
T  39470712 tttttaatttctcaaaggcttaagtttgatgcgtagaaaatgttttcata-acaaactagttatttggagtacatgccacgcttttgttcacaatgtttt 39470614  T
Q  371 tgtaattagctt 382  Q
    ||||||||||||    
T  39470613 tgtaattagctt 39470602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 475
Target Start/End: Original strand, 39139802 - 39139866
Alignment:
Q  413 tcatttgttaagagaaaattgaaatcttg--gccaatgcttggaaaatgaaataaacttcaaatt 475  Q
    |||||||||||||||||||||| ||||||  |  ||||| |||||||||||||| ||||||||||    
T  39139802 tcatttgttaagagaaaattgacatcttggtgttaatgcgtggaaaatgaaatagacttcaaatt 39139866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 39470958 - 39470861
Alignment:
Q  21 ggcaaatagtgtttttactagaactggtgagtgtcatcatcc-aatatgcaacaacctaatatgtaaagatatctgctagcggaaacctgctaacatgtt 119  Q
    |||||||||| |||||||| ||| | |||||||||||| ||| |||| |||||||||||  ||||| || ||  || ||||| |||||||||||||||||    
T  39470958 ggcaaatagtatttttactggaagtagtgagtgtcatcttccaaatacgcaacaaccta--atgtatagttacgtggtagcgaaaacctgctaacatgtt 39470861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 462
Target Start/End: Complemental strand, 39470569 - 39470516
Alignment:
Q  409 tctctcatttgttaagagaaaattgaaatcttggccaatgcttggaaaatgaaa 462  Q
    |||||||||||||  |||||| |||||||||||   ||||||||||||||||||    
T  39470569 tctctcatttgttccgagaaagttgaaatcttgattaatgcttggaaaatgaaa 39470516  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 415 - 501
Target Start/End: Original strand, 33152765 - 33152849
Alignment:
Q  415 atttgttaagagaaaattgaaatcttggccaatgcttggaaaatgaaataaacttcaaatttgtatatctctctttagtctttatat 501  Q
    |||||||| || |||||||  ||||||||  ||||||||||| ||||||| ||||||||||||   |||||||||| ||||||||||    
T  33152765 atttgttatgaaaaaattggcatcttggctgatgcttggaaagtgaaatagacttcaaatttg--catctctcttttgtctttatat 33152849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 695
Target Start/End: Original strand, 33153126 - 33153199
Alignment:
Q  622 cttgcagattttgcttagaatcatatctggaagttgcaacatatggaagttgtttgattcatttgtgcatataa 695  Q
    ||||||||||||| | |||||| |||| |||||  ||||||||| |||| |||| ||||||| ||||| |||||    
T  33153126 cttgcagattttgttcagaatcttatccggaagaagcaacatattgaagctgttagattcatatgtgcttataa 33153199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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