View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8366_low_3 (Length: 675)

Name: NF8366_low_3
Description: NF8366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8366_low_3
NF8366_low_3
[»] chr8 (1 HSPs)
chr8 (19-666)||(10031939-10032586)


Alignment Details
Target: chr8 (Bit Score: 636; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 19 - 666
Target Start/End: Original strand, 10031939 - 10032586
Alignment:
Q  19 tattccgttcgcttcatcgttcgatttcatcctttttgaattaggtttagggtttcgaattgcgagattcgtaaatcctgaattgcgttggtggttgtga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10031939 tattccgttcgcttcatcgttcgatttcatcctttttgaattaggtttagggtttcgaattgcgagattcgtaaatcctgaattgcgttggtggttgtga 10032038  T
Q  119 ctattgattaacgtattgaacaaggaggttttggaattgtgggaattttgattacattatttcgaaatttgaaattagggttttcagatgaaacgaaata 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032039 ctattgattaacgtattgaacaaggaggttttggaattgtgggaattttgattacattatttcgaaatttgaaattagggttttcagatgaaacgaaata 10032138  T
Q  219 gttgttttatgaaatggtgattaaacgtagtgttaaagttgaaatgccgaaattgaaaaggtgtaaattggatgagcctcattgtgaagatgaagaacat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032139 gttgttttatgaaatggtgattaaacgtagtgttaaagttgaaatgccgaaattgaaaaggtgtaaattggatgagcctcattgtgaagatgaagaacat 10032238  T
Q  319 gaaggttgttccgggagtcagaagaagcataaagtgaatgggtttaattctgaagtggattttgacactggttctgcttcatggaacagtgaagttacaa 418  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032239 gaaggttgttccgggagtcagaagaagcataaggtggatgggtttaatcctgaagtggattttgacactggttctgcttcatggaacagtgaagttacaa 10032338  T
Q  419 ataatggtggtgttggcgaagttgaattgaattcatcgcgtaaaacggtgaaagtacggttctcgtgtggcggtcctcaggtgcttccgtcaagctttga 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032339 ataatggtggtgttggcgaagttgaattgaattcatcgcgtaaaacggtgaaagtacggttctcgtgtggcggtcctcaggtgcttccgtcaagctttga 10032438  T
Q  519 aaacgatggtaaggttatggtgaagaccgggagtaatggttctggttccggtcttagttttgacggtgcagatgaaaagattaatgggaatgtgggaagg 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032439 aaacgatggtaaggttatggtgaagaccgggagtaatggttctggttccggtcttagttttgacggtgcagatgaaaagattaatgggaatgtgggaagg 10032538  T
Q  619 aggaaagatgtttataggctggaggaatttactttgggtgatattgtt 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032539 aggaaagatgtttataggctggaggaatttactttgggtgatattgtt 10032586  T

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