View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8366_low_4 (Length: 461)
Name: NF8366_low_4
Description: NF8366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8366_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 25 - 445
Target Start/End: Complemental strand, 17358098 - 17357670
Alignment:
| Q |
25 |
tttggtgttatcagtatggaagctttgtctttctgatcaaattaaaaatgttcaatatttagacattgatttgaaattattaacatacnnnnnnnctact |
124 |
Q |
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| T |
17358098 |
tttgctgttatcagtatggaagctttgtctttctgatcaaatttaaaatgttcaatatttagacattgatttgaaattattaacatacaaaaaaactact |
17357999 |
T |
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| Q |
125 |
actaacattgatttgtcggttgagcgtaatttttgtttgtttttggtaacgatgttattgtgagaactatcgactttgttaataattaatctctactcaa |
224 |
Q |
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| T |
17357998 |
actaacattgatttgtcggttgagcgtaatttttgtttgtttttggtaacgatgttgttgtgagaactatcgactttgttaataattaatctctagtcaa |
17357899 |
T |
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| Q |
225 |
caaaataggtggtccctcttttcaatcacgtttattttatttacaacacttgaacatgagatcttgttt-agggatctgagtttagttccattcggatca |
323 |
Q |
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| T |
17357898 |
caaaataggtggttcctcttctcaatcacgtttattttatttacaacactcgaacatgagatcttgtttaagggatctgagtttagttccactcggatca |
17357799 |
T |
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| Q |
324 |
acattatgttcgt-------tataatcgtttgcaagaaaaatttggatttatgcgattgcatttacatagacattaaaaatctcgacggctagtgatcat |
416 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
17357798 |
acattatgttcgttattatatataatcgtttgcaagaaaaattcggatttatgcgattgcatttaaatagacattaaaaatcttgacggctagtgatcat |
17357699 |
T |
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| Q |
417 |
tgctcatttttcagaacattgttccttat |
445 |
Q |
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| T |
17357698 |
tgctcatttttcaaaacattgttccttat |
17357670 |
T |
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