View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8366_low_5 (Length: 411)
Name: NF8366_low_5
Description: NF8366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8366_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 27028417 - 27028165
Alignment:
| Q |
18 |
aatatgattcctagcaaaccaaataacattgatgatattgataagggtagcaatggtgacaatcttgcattgaggattccaagaaccattacaaatgttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27028417 |
aatatgattcctagcaaaccaaataacattgatgatattgataagggtagcaatgatgacaatcttgcattgaggattccaagaaccattacaaatgttc |
27028318 |
T |
|
| Q |
118 |
caa------tctctagtttgaaaattaagcctgcaattgacagtgctagaaaaccaacgccaaatattaatggcaaaagaacattccaagaacaaatgtt |
211 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27028317 |
caaatatcttctctagtttgaaaattaagcctgcaattgacagtgctagaaaaccaacgccaaatattaatggcaaaagaacattccaagaacaaatgtt |
27028218 |
T |
|
| Q |
212 |
gtgacgattcagacatacagttgtagagagagcacatagaggggagatggcaa |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27028217 |
gtgacgattcagacatacagttgtagagagagcacatagaggggagatggcaa |
27028165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 262 - 402
Target Start/End: Complemental strand, 27028105 - 27027968
Alignment:
| Q |
262 |
caaagattttgagggagggaaatcaggagcccaaattagctaattagcccattccattttaggggatttttcttgaaatcataagcacctttcagagtta |
361 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
27028105 |
caaagattttgagggagggaaatcaggagaccaaattagct---tagcccatttcattttaggggatttttcttgaaatcataagcaccttacagattta |
27028009 |
T |
|
| Q |
362 |
actccccattattactatgcttccatattaatttatctctg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27028008 |
actccccattattactatgcttccatattaatttatctctg |
27027968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 8026926 - 8026885
Alignment:
| Q |
79 |
atcttgcattgaggattccaagaaccattacaaatgttccaa |
120 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8026926 |
atcttacattgaggattccaagatccattacaaatgttccaa |
8026885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 30272400 - 30272440
Alignment:
| Q |
80 |
tcttgcattgaggattccaagaaccattacaaatgttccaa |
120 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30272400 |
tcttacattgaggattccaagatccattacaaatgttccaa |
30272440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 22282900 - 22282940
Alignment:
| Q |
80 |
tcttgcattgaggattccaagaaccattacaaatgttccaa |
120 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
22282900 |
tcttacattaaggattccaagatccattacaaatgttccaa |
22282940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University