View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8366_low_7 (Length: 359)
Name: NF8366_low_7
Description: NF8366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8366_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 32213157 - 32213489
Alignment:
| Q |
1 |
agtgtggaaacaaagaagcttaaggtcaagttttattggggaagcaaaaatatgcacaaagctcaatgaagtttagaaagaatattattaagaatagaat |
100 |
Q |
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| T |
32213157 |
agtgtggaaacaaagaaacttaaggtcaagttttattggggaagcaaaaatatgcacaaagctcaatgaagtttagaaagaatattattaagaatagaat |
32213256 |
T |
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| Q |
101 |
atgtgattaagagtttgtcatgtgatgtgtaccacccaccaaacacaagacaaaacttaattaattaacttaatgaaggaattggatcatctacaaatgt |
200 |
Q |
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| T |
32213257 |
atgtgattaagagtttgtcatgtgatgt------accaccaaacacaagacaaaacttaattaattaacttaatgaaggaattgaatcatctataaatgt |
32213350 |
T |
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| Q |
201 |
agaccgttagatttnnnnnnntaaattttctctaaattcaactgtttctatgattccagcactatacataatacaatcgtagagaatccaagctgcaata |
300 |
Q |
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|||| |||| |||| | ||||||||||||||||||||||||||| |||| || ||||||||||| | ||||||||||||||||||||||||||| |
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| T |
32213351 |
agacagttaaatttaaaaagat-aattttctctaaattcaactgtttctacgattgcaacactatacatactgcaatcgtagagaatccaagctgcaata |
32213449 |
T |
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| Q |
301 |
ccgtagtccgatcgtagaagatccaacgtctagaatgaat |
340 |
Q |
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||||||| | |||||||||||||||||||||||||||||| |
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| T |
32213450 |
ccgtagttcaatcgtagaagatccaacgtctagaatgaat |
32213489 |
T |
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