View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8367_high_2 (Length: 332)
Name: NF8367_high_2
Description: NF8367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8367_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 28 - 315
Target Start/End: Complemental strand, 54632816 - 54632529
Alignment:
| Q |
28 |
catagaaaacagaatggcagaggagataataaatgatatacctctctcttgctagggaaaaaactggtccccgtcttaaatagttctaggttaaagtgat |
127 |
Q |
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| T |
54632816 |
catagaaaacagaatggcagaggagataataaatgatatacctctctcttgctagggaaaaaactggtccccgtcttaaatagttctaggttaaagtgat |
54632717 |
T |
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| Q |
128 |
tttgtcgaatcaatgaccacatatcaagtaaatggtaaatgatggccaaaactggctatggccatttcaatatgctcggtacgacatcagaattcagaat |
227 |
Q |
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| T |
54632716 |
tttgtcgaatcaatgaccacatatcaagtaaatggtaaatgatggccaaaactggctatggccatttcaatatgctcggtacgacatcagaattcagaat |
54632617 |
T |
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| Q |
228 |
tagaattgcccaaagtcactgattttcaaataaatataaagatttgaaacatacaaaaactcacagacatgcacgtattgaaatttgt |
315 |
Q |
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| T |
54632616 |
tagaattgcccaaagtcactgattttcaaataaatataaagatttgaaacatacaaaaactcacagacatgcacgtattgaaatttgt |
54632529 |
T |
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Back To:
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Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 157 - 282
Target Start/End: Original strand, 45312931 - 45313057
Alignment:
| Q |
157 |
aaatggtaaatgatggccaaaactggc--tatggccatttcaatatgctcggtacgacatcagaattcagaattagaattgcccaaagtcactgattttc |
254 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||| |||||| || | ||||||||||||||| |
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| T |
45312931 |
aaatggtaaatgatggccaaaactggaaatatggccatttcaatatgctaagtacaacatcagaattcagaactagaatagctc-aagtcactgattttc |
45313029 |
T |
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| Q |
255 |
aaataaatataaagatttgaaacataca |
282 |
Q |
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| T |
45313030 |
aaatacatatatagatttgaaacctaca |
45313057 |
T |
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