View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8367_high_4 (Length: 236)
Name: NF8367_high_4
Description: NF8367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8367_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45320912 - 45320691
Alignment:
| Q |
1 |
agcagctgcagcggcggcttttctagcggcgatagcttttcgtccggcgaaatctgttcagtttaacagatctgaagattttcagcaaccaagtggatga |
100 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45320912 |
agcagcggcagcggcggcttttctagcggcggtagcttttcgtccggcgaaatctgttcagtttaacagatctgaagattttcagcaaccaagtggatga |
45320813 |
T |
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| Q |
101 |
aggtgtggaattttcgacaaagagaaaaaggtagataacaagcctctcttcaacaagcaggagaggtgtgagcggtgtgtggatgtgagcggtgtgttga |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45320812 |
aggtgtggaattttcgacaaagagaagaaggtagataacaagcctctcttcaacaagcaggagaggtgtgagcggtgtgtggatgtgagcggtgtgttga |
45320713 |
T |
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| Q |
201 |
agaacaaggaggaggagagaag |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
45320712 |
agaacaaggaggaggagagaag |
45320691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 41466674 - 41466458
Alignment:
| Q |
1 |
agcagctgcagcggcggcttttctagcggcgatagcttttcgtccggcgaaatctgttcagtttaacagatctgaagattttcagcaaccaagtggatga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41466674 |
agcagctgcagcggcggcttttctagcggcgatagcttttcgtccggcgaaatttgttcagtttaacagatctgaagattttcagcaaccaagtggatga |
41466575 |
T |
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| Q |
101 |
aggtgtggaattttcgacaaagagaaaaaggtagataacaagcctctcttcaacaagcaggagaggtgtgagcggtgtgtggatgtgagcggtgtgttga |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41466574 |
aggtgtggaattttcgacaaagagaagaaggtagataacaagcctgtcttcaacaaggaggagaggtgtgagcggtgtgtggatgtgagcggtgtgttga |
41466475 |
T |
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| Q |
201 |
agaacaaggaggaggag |
217 |
Q |
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||||||||||||||||| |
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| T |
41466474 |
agaacaaggaggaggag |
41466458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 35443440 - 35443401
Alignment:
| Q |
11 |
gcggcggcttttctagcggcgatagcttttcgtccggcga |
50 |
Q |
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||||||||||||||||||||||||||||| | |||||||| |
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| T |
35443440 |
gcggcggcttttctagcggcgatagctttccttccggcga |
35443401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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