View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8367_low_3 (Length: 250)
Name: NF8367_low_3
Description: NF8367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8367_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 45320901 - 45321129
Alignment:
| Q |
8 |
gctgctgctgctaacgctaccgctacgacgtcgttttcattcctcttctccaggtctgnnnnnnnaacctaattttttattgttagaacattgtgttttg |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45320901 |
gctgccgctgctaacgctaccgctacgacgtcgttttcattcctcttctccaggtctgtttttttaacctaattttttattgttagaacattgtgttttg |
45321000 |
T |
|
| Q |
108 |
tgattggtaacttaaacatagaaattgatttttagttggtttgaaaattattgatttatttttggtggaatattcttcaaattaattccttcgatgagga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45321001 |
tgattggtaacttaaacatagaaattgatttttagttggtctgaaaattattgatttatttttggtggaatattcttcaaattaattccttcgatgagga |
45321100 |
T |
|
| Q |
208 |
tattgatgaataaaaatatgtttttcttc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
45321101 |
tattgatgaataaaaatatgtttttcttc |
45321129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 42 - 237
Target Start/End: Original strand, 41466735 - 41466933
Alignment:
| Q |
42 |
tttcattcctcttctccaggtctgnnnnnnnaacctaattttttattgttagaacattgtgttttgtgattggtaacttaaacatagaaatt---gattt |
138 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41466735 |
tttcattcctcttctccaggtctgtttttttaacctaattttttattgttagaacattgtgttttgtgattggtaacttaaacatagaaattattgattt |
41466834 |
T |
|
| Q |
139 |
ttagttggtttgaaaattattgatttatttttggtggaatattcttcaaattaattccttcgatgaggatattgatgaataaaaatatgtttttcttct |
237 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41466835 |
ttagttggtctgaaaattattgaattatttttggtggaatattcttcaaattaattccttcgatgaggatattgatgaataaaaatatgtttttcttct |
41466933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41466662 - 41466706
Alignment:
| Q |
1 |
cgctgcagctgctgctgctaacgctaccgctacgacgtcgttttc |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41466662 |
cgctgcagctgctgctgctaacgctaccgctacgatgtcgttttc |
41466706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 35443451 - 35443485
Alignment:
| Q |
11 |
gctgctgctaacgctaccgctacgacgtcgttttc |
45 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
35443451 |
gctgctgctaacgctaccgctacgacatcgttttc |
35443485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 35443546 - 35443586
Alignment:
| Q |
73 |
aacctaattttttattgttagaacattgtgttttgtgattg |
113 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
35443546 |
aacctaattttttatttttagaacattttgttttctgattg |
35443586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University