View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8367_low_4 (Length: 237)
Name: NF8367_low_4
Description: NF8367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8367_low_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 23598284 - 23598053
Alignment:
| Q |
7 |
tcaattgagccattttttaatctttttctagtatgccctcgaacaccaacctgctacagttttaaaagccaaaccaaaaccaaaattgaagaagtctatt |
106 |
Q |
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| T |
23598284 |
tcaattgagccattttttaatctttttctagtatgccctcgaacaccaacctgctacagttttaaaagccaaaccaaaaccaaaattgaagaagtctatt |
23598185 |
T |
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| Q |
107 |
cacttcaaatttcttaaccgattataatcctaacaaaaactacccaacttagaaagat-aaacacgaatttgaatccatgatcaatttatcaaaagtcaa |
205 |
Q |
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| T |
23598184 |
cacttcaaatttcttaactgattataatcctaacaaaaactacccaacttagaaagataaaacacgaatttgaatccatgatcaatttatcaaaagtcaa |
23598085 |
T |
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| Q |
206 |
aacaagaaaaatgaagaacaggaacataaacc |
237 |
Q |
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| T |
23598084 |
aacaagaaaaatgaagaacaggaacttaaacc |
23598053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 23598328 - 23598290
Alignment:
| Q |
51 |
accaacctgctacagttttaaaagccaaaccaaaaccaa |
89 |
Q |
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| T |
23598328 |
accaacctgatacagtttcaaaagccaaaccaaaaccaa |
23598290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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