View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8368_high_14 (Length: 398)
Name: NF8368_high_14
Description: NF8368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8368_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 7952985 - 7952727
Alignment:
| Q |
1 |
tttcattgagacattcatcaaacactttcaccaaaatggccaaacttggaaaactaacaatgtttaagtcagctatcaaaagatggccttcattaaccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7952985 |
tttcattgagacattcatcaaacactttcaccaaaatggccaaacttggaaaattaacaaagcttaagtcagctatcaaaagatggccttcattaaccaa |
7952886 |
T |
|
| Q |
101 |
actcagccgcaacaatagctctgtctcagcctcaaccaagcaacatgaacaagaaaaagaacttcatgctgtctatgtcggaaagtcgcggcgacaatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7952885 |
actcagccgcaacaatagctctgtctcatcctcaaccaagcaacatgaacatgaacaagaacttcatgctgtctatgtcggaaagtcgcggcgacaatac |
7952786 |
T |
|
| Q |
201 |
ctcgtgaactccgatgtcattcaacatcctgtgtttcaggagctggtggatagatcttc |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7952785 |
ctcgtgaactccgatgtcattcaacatcctgtgtttcaggagctggtggatagatcttc |
7952727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 7937045 - 7936793
Alignment:
| Q |
1 |
tttcattgagacattcatcaaacactttcaccaaaatggccaaacttggaaaactaacaatgtttaagtcagctatcaaaagatggccttcattaaccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7937045 |
tttcattgagacattcatcaaacactttcaccaaaatggccaaacttggaaaattaacaaagcttaagtcagctatcaaaagatggccttcattaaccaa |
7936946 |
T |
|
| Q |
101 |
actcagccgcaacaatagctctgtctcagcctcaaccaagcaacatgaacaagaaaaagaacttcatgctgtctatgtcggaaagtcgcggcgacaatac |
200 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7936945 |
actcagccgcaacaatagctctatctcttcctcctccaagc------aacaagaacaagagcttcatgctgtctatgtcggaaagtcgcggcgacaatac |
7936852 |
T |
|
| Q |
201 |
ctcgtgaactccgatgtcattcaacatcctgtgtttcaggagctggtggatagatcttc |
259 |
Q |
| |
|
|| ||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
7936851 |
cttgtgaactccaatgttgttcaacaccctgtgtttcaggagctagtggatagatcttc |
7936793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 7952649 - 7952605
Alignment:
| Q |
337 |
aaggtgagacacaattggggtccatggctgagctggttgagttct |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7952649 |
aaggtgagacacaattggggtccatggctgagctggttgagttct |
7952605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 7936715 - 7936671
Alignment:
| Q |
337 |
aaggtgagacacaattggggtccatggctgagctggttgagttct |
381 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7936715 |
aaggtgagacacagttggggtccatggctgagctggttgagttct |
7936671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University