View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8368_high_17 (Length: 338)
Name: NF8368_high_17
Description: NF8368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8368_high_17 |
 | |
|
| [»] scaffold0674 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 2682073 - 2682389
Alignment:
| Q |
15 |
acatctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaa |
114 |
Q |
| |
|
|||||||||||||||| |||| |||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2682073 |
acatctctcccaccgacaagttcttatggatcgataaatcatacaacttcctgaatttctccattaacgacaccgtccccacccaacaatccgaccaaaa |
2682172 |
T |
|
| Q |
115 |
gaaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctc |
214 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2682173 |
gaaagtatttaaaccattacctaaatgttttaatatacttccttcaaaccaactaccactctccacacctatgccattttgaattctaacaatctccctc |
2682272 |
T |
|
| Q |
215 |
caccaagatgaacatgtcacgccaccctctcttaaccgatctctcttcgccccatagcgagagg-caacaccttaaaccacaaactctccctgtccacta |
313 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || || | |||||| | ||| ||||||||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
2682273 |
caccaagatgaacctgtcacgccaccctctcgtagcctacctctctcctccctatagcgagaggaaaacaccttaaaccacagaccctccctgtccacta |
2682372 |
T |
|
| Q |
314 |
aacacctccaacaccat |
330 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
2682373 |
agcacctccaacaccat |
2682389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 842316 - 842629
Alignment:
| Q |
15 |
acatctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaa |
114 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||||| |||||||||||||||||| |||||| |||||||||||||||||| | |||| ||||||||| |
|
|
| T |
842316 |
acatctctcccaccgacaagttcttatgattcgataagtcatacaacctcctaaat--ctccatgaacgacaccgtccccacctagcaattcgaccaaaa |
842413 |
T |
|
| Q |
115 |
gaaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctc |
214 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
842414 |
gaaagtattaaaaccattacctaaacattttgatatactttcttcaaaccaactatcaccctccacacctattccattttgaattttaactatctccctc |
842513 |
T |
|
| Q |
215 |
caccaagatgaacatgtcacgccaccctctcttaaccgatctctcttcgccccatagcgag-aggcaacaccttaaaccacaaactctccctgtccacta |
313 |
Q |
| |
|
||| ||| ||| | ||||| |||||||| || |||||| ||||| | | |||| |||| || |||||| ||||||||||||| || ||| ||||||| |
|
|
| T |
842514 |
cactaagctgaccccgtcacaccaccctccctcaaccgacatctctgctactcataacgagaagacaacacattaaaccacaaaccct-cctatccacta |
842612 |
T |
|
| Q |
314 |
aacacctccaacaccat |
330 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
842613 |
aacacttccaacaccat |
842629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 13640508 - 13640312
Alignment:
| Q |
23 |
cccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaagaaagcat |
122 |
Q |
| |
|
|||||||| || ||||||||||||||||| || ||||||||||||||| ||||| | ||||| |||||| ||||||||||||||||||||||||||| || |
|
|
| T |
13640508 |
cccaccgacaactccttatgaatcgataattcctacaacctcctaaatctctccctgaacgaaaccgtctccacccaacaatccgaccaaaagaaagtat |
13640409 |
T |
|
| Q |
123 |
ttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccacca |
219 |
Q |
| |
|
| | || ||||| | |||||||| |||||| |||||||||||| | ||||||| |||||||| || | |||||| | ||||||||||||||||| |
|
|
| T |
13640408 |
taagactgttaccaagacgttttgttatactatcttcaaaccaattcccacccttaacacctatcccgtcatgaatttttactatctccctccacca |
13640312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 19837468 - 19837783
Alignment:
| Q |
16 |
catctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaag |
115 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19837468 |
catctcccccaccgacaaatccttatgaatcgataagtcatacaacctcctaaatctctccatgaacgacaccgtccccacccaacaatccgaccaaaag |
19837567 |
T |
|
| Q |
116 |
aaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctcc |
215 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
19837568 |
aaagtattaaaaccattacctaaacgtttggatatactttcttcaaaccaactaccaccctccacaccaattccattttgaattttaactatctccctcc |
19837667 |
T |
|
| Q |
216 |
accaagatgaacatgtcacgccaccctctcttaaccgatctctcttcgccccatagcgag-aggcaacaccttaaaccacaaactctccctgtccactaa |
314 |
Q |
| |
|
|||| | ||| | || || ||||| || || |||||| |||||| | ||||||| |||| || |||||||||||||||||| | |||||| |||||||| |
|
|
| T |
19837668 |
accatgctgaccccgttacaccaccttccctcaaccgacctctctgctccccataacgagaagacaacaccttaaaccacaagccctccctatccactaa |
19837767 |
T |
|
| Q |
315 |
acacctccaacaccat |
330 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
19837768 |
acacctccaacaccat |
19837783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 43469705 - 43469468
Alignment:
| Q |
15 |
acatctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaa |
114 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| || ||| | | ||||||||| ||||||| || ||| |||||||||||||||||||||||||| |
|
|
| T |
43469705 |
acatctctcccaccgacaaatccttatgaatcgacaagtcaaaaagtctcctaaatctctccataaatgactttgtccccacccaacaatccgaccaaaa |
43469606 |
T |
|
| Q |
115 |
gaaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctc |
214 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||| | || ||||||||| |
|
|
| T |
43469605 |
gaaagtatttaagccattacctaaacgttttgttacactttcttcaaaccaactacaaccctccacacctatgccattttaaatttttacaatctccctc |
43469506 |
T |
|
| Q |
215 |
caccaagatgaacatgtcacgccaccctctcttaaccg |
252 |
Q |
| |
|
||||||| ||| | ||| |||||||||| |||||||| |
|
|
| T |
43469505 |
caccaagctgaccccgtcgcgccaccctcccttaaccg |
43469468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 53678920 - 53678709
Alignment:
| Q |
16 |
catctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaag |
115 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| | ||||||||||||||||||| |
|
|
| T |
53678920 |
catctctcccactgacaggtccttatgaatcgataaatcatacaacctcctaaatctctccatgaacgacattgtccataaccaacaatccgaccaaaag |
53678821 |
T |
|
| Q |
116 |
aaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctcc |
215 |
Q |
| |
|
|||| |||||| ||||| |||||||||||||| ||||||| ||| |||||||||||||| ||||| |||| ||||||||||| ||| ||||||| ||| |
|
|
| T |
53678820 |
aaagtatttaagccattgcctaaacgttttgagatacttttttcgaaccaactaccaccttccacgcctacatcattttgaattttaattatctccttcc |
53678721 |
T |
|
| Q |
216 |
accaagatgaac |
227 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
53678720 |
accaagctgaac |
53678709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 15 - 330
Target Start/End: Complemental strand, 19309395 - 19309079
Alignment:
| Q |
15 |
acatctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaa |
114 |
Q |
| |
|
||||||| ||||| || ||||| |||||||| ||||| ||| | | |||||||| ||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
19309395 |
acatctcacccacagacaagtcgttatgaattgataagtcaaaaagtctcctaaacctctccataaaagacaccgtccccacccaacaatccgaccaaaa |
19309296 |
T |
|
| Q |
115 |
gaaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctc |
214 |
Q |
| |
|
||||| ||| || |||| ||| ||||||||| ||||||||||||||||||| | |||||||||||||||| |||||||||||| | |||||||||||| |
|
|
| T |
19309295 |
gaaagtattcaagccatcacccaaacgttttattatactttcttcaaaccaattctcaccctccacacctattccattttgaatttttactatctccctc |
19309196 |
T |
|
| Q |
215 |
caccaagatgaacatgtcacgccaccctctcttaaccgatctctcttcgccccatagcgag-aggcaacaccttaaaccacaaactctccctgtccacta |
313 |
Q |
| |
|
||||||| || | ||||| |||||||| |||||||| |||| | ||||||| || | | |||||||||| |||| || | ||||||| |||||| |
|
|
| T |
19309195 |
caccaagcagaccccgtcactccaccctcccttaaccgccctctatgttccccataacgggaaaacaacaccttataccataagccctccctgaccacta |
19309096 |
T |
|
| Q |
314 |
aacacctccaacaccat |
330 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
19309095 |
aacatctccaacaccat |
19309079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 330
Target Start/End: Original strand, 17997131 - 17997421
Alignment:
| Q |
41 |
tgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaagaaagcatttaaaccattacctaaac |
140 |
Q |
| |
|
||||| ||||||||| ||| |||| ||||| ||||||| |||| | | |||||||||| || |||||||||||| ||| ||| ||| ||||||| | || |
|
|
| T |
17997131 |
tgaatggataaatcaaacagcctcttaaatctctccataaacgtcttcatccccacccagcagtccgaccaaaagtaagtattaaaatcattaccaatac |
17997230 |
T |
|
| Q |
141 |
gttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtcacgccacc |
240 |
Q |
| |
|
||||||| ||||| |||||||||||| | |||||||| || ||||| || | ||||| | ||||| ||||||||||||| || | || ||||| |
|
|
| T |
17997231 |
gttttgaaatactctcttcaaaccaattcccaccctctactcctatcccttcacgaatttttactatttccctccaccaagccgaccccatcctaccacc |
17997330 |
T |
|
| Q |
241 |
ctctcttaaccgatctctcttcgccccatagcgag-aggcaacaccttaaaccacaaactctccctgtccactaaacacctccaacaccat |
330 |
Q |
| |
|
|||||| | ||| ||||| | | ||||| || | || |||||||| |||||||||| | ||||| | |||||||||||||||||||||| |
|
|
| T |
17997331 |
ctctctaagccgccctctcacctctccataacgggaagacaacacctgaaaccacaaattgtccctattcactaaacacctccaacaccat |
17997421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 41762766 - 41762693
Alignment:
| Q |
41 |
tgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaa |
114 |
Q |
| |
|
|||| |||||||||| | |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41762766 |
tgaaccgataaatcaaataacctcctaaatgtctccatcaacgacatcgtccccacccaacaatccgaccaaaa |
41762693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 327
Target Start/End: Original strand, 14528962 - 14529249
Alignment:
| Q |
41 |
tgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaagaaagcatttaaaccattacctaaac |
140 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||| | |||| | ||| ||||||||||| |||||||||||| ||| || || | ||||| | || |
|
|
| T |
14528962 |
tgaatcgataaatcaaacaacctcctatatctctccctaaacgtcgtcgttcccacccaacagtccgaccaaaagtaagtatcaaacctgttaccaatac |
14529061 |
T |
|
| Q |
141 |
gttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtcacgccacc |
240 |
Q |
| |
|
|||| || ||||| |||||||||||| | ||||||| || ||||| || | ||||| | ||||| ||| ||||||||| || | | ||||| |
|
|
| T |
14529062 |
gtttagaaatactctcttcaaaccaatttgcaccctctactcctatcccttcacgaatttttactatttccttccaccaagtcgaccccaacctaccacc |
14529161 |
T |
|
| Q |
241 |
ctctcttaaccgatctctcttcgccccatagcgagagg-caacaccttaaaccacaaactctccctgtccactaaacacctccaacac |
327 |
Q |
| |
|
|||||| ||||| |||||| | | ||||| | || | | ||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
14529162 |
ctctctaaaccgccctctctcctctccataacaggacgacgacaccttaaaccacaaactgtccctatccactaaacacctccaacac |
14529249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 1308474 - 1308159
Alignment:
| Q |
16 |
catctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaag |
115 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||||||||||||||| ||||||||| ||| |||||| | ||||| | ||||||||||||||||||| |
|
|
| T |
1308474 |
catctctcccactgacagatccttatgaatcgataaatcatacaaccttctaaatttcaccaagaacgactctgtccctaaccaacaatccgaccaaaag |
1308375 |
T |
|
| Q |
116 |
aaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctcc |
215 |
Q |
| |
|
|||| |||||| ||||| |||||||||||||| ||||||||||| |||||||||||||| |||||| ||| |||||||||||| ||| ||||||||||| |
|
|
| T |
1308374 |
aaagtatttaagccattgcctaaacgttttgagatactttcttcgaaccaactaccaccttccacatctactccattttgaattttaattatctccctcc |
1308275 |
T |
|
| Q |
216 |
accaagatgaacatgtcacgccaccctctcttaaccgatctctcttcgccccatagcgagagg-caacaccttaaaccacaaactctccctgtccactaa |
314 |
Q |
| |
|
|||||| ||||| ||||| ||| ||||| | |||||| | | | | ||||||| ||||||| ||||||| ||||||| |||| |||||| |||||||| |
|
|
| T |
1308274 |
accaagctgaacctgtcatgcccccctccttcaaccgaccaccttgctccccatatcgagaggacaacaccctaaaccataaaccctccctatccactaa |
1308175 |
T |
|
| Q |
315 |
acacctccaacaccat |
330 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
1308174 |
acacctccaacaccat |
1308159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 16467752 - 16468067
Alignment:
| Q |
16 |
catctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaag |
115 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||||||||||||||||||||||| ||||||| | |||||| ||||| | ||||||||||||||||||| |
|
|
| T |
16467752 |
catctctcccactgacaggtccttatgaatcgataaatcatacaacctcctaaatctctccatgaccgacactgtccctaaccaacaatccgaccaaaag |
16467851 |
T |
|
| Q |
116 |
aaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctcc |
215 |
Q |
| |
|
|||| |||||| |||| ||||||||||| || ||| ||||||| |||||||||||||| || || |||| |||||||||||| ||| ||||||||||| |
|
|
| T |
16467852 |
aaagtatttaaggcattgcctaaacgtttagagatattttcttcgaaccaactaccaccttcgacgcctacaccattttgaattttaattatctccctcc |
16467951 |
T |
|
| Q |
216 |
accaagatgaacatgtcacgccaccctctcttaaccgatctctcttcgccccatagcgagagg-caacaccttaaaccacaaactctccctgtccactaa |
314 |
Q |
| |
|
|||||| | ||| |||||||| ||||| |||||| | | | | ||||||| ||||||| ||||||| ||||||| |||| |||||| |||| || |
|
|
| T |
16467952 |
accaagctaaacccgtcacgcccccctcctacaaccgaccaccttgctccccatatcgagaggacaacaccctaaaccataaaccctccctatccatgaa |
16468051 |
T |
|
| Q |
315 |
acacctccaacaccat |
330 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
16468052 |
acacgtccaacaccat |
16468067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 3489666 - 3489482
Alignment:
| Q |
15 |
acatctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaa |
114 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||||| ||| | | |||||||| ||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
3489666 |
acatctctcccacagacaagtccttatgaattgataagtcaaaaagtctcctaaacctctccataaaagacaccgtccccacccaacaatccgaccaaaa |
3489567 |
T |
|
| Q |
115 |
gaaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaatt |
199 |
Q |
| |
|
||||| || || |||| ||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
3489566 |
gaaagttttcaagccatcacccaaacgttttgttatactttcttcaaaccaactcccaccctccactcctattccattttgaatt |
3489482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 132 - 326
Target Start/End: Complemental strand, 5866556 - 5866361
Alignment:
| Q |
132 |
tacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||| | ||| | || |
|
|
| T |
5866556 |
tacctaaacgttttgatatactttcttcaaaccaactaccaccctctacaccaattccattttgaattttaactatctccctccaccgtgctgaccccgt |
5866457 |
T |
|
| Q |
232 |
cacgccaccctctcttaaccgatctctcttcgccccatagcgag-aggcaacaccttaaaccacaaactctccctgtccactaaacacctccaaca |
326 |
Q |
| |
|
||| ||||| || | |||||| |||||| | ||||||| |||| || |||||||||||||||||| | |||||| |||||||||||||||||||| |
|
|
| T |
5866456 |
cacaccaccttccttcaaccgacctctctgctccccataacgagaagacaacaccttaaaccacaagccctccctatccactaaacacctccaaca |
5866361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 26711567 - 26711736
Alignment:
| Q |
16 |
catctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaag |
115 |
Q |
| |
|
|||||||||||| || | ||||||||||||| ||||| ||||||||||||||||| ||||||| |||||||| ||||| | ||||||||||||||||||| |
|
|
| T |
26711567 |
catctctcccactgacaggtccttatgaatcaataaaacatacaacctcctaaatctctccatgaacgacactgtccctaaccaacaatccgaccaaaag |
26711666 |
T |
|
| Q |
116 |
aaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacaccta |
185 |
Q |
| |
|
|||| |||||| ||||| ||||||| |||||| ||||||||||| |||||||| ||||| ||||| |||| |
|
|
| T |
26711667 |
aaagtatttaagccattgcctaaacattttgagatactttcttcgaaccaactcccaccttccacgccta |
26711736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 5874418 - 5874292
Alignment:
| Q |
16 |
catctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaag |
115 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||| ||||||||||| |||||| ||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5874418 |
catctcccccaccgacaaatccttatgaatcgataagtcatacaaccttctaaatctctccatgaacgataccgtccccacccaacaatccgaccaaaag |
5874319 |
T |
|
| Q |
116 |
aaagcatttaaaccattacctaaacgt |
142 |
Q |
| |
|
|||| ||| |||||||||||||||||| |
|
|
| T |
5874318 |
aaagtattaaaaccattacctaaacgt |
5874292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 330
Target Start/End: Original strand, 14551999 - 14552050
Alignment:
| Q |
279 |
caacaccttaaaccacaaactctccctgtccactaaacacctccaacaccat |
330 |
Q |
| |
|
|||||||||| ||||||||| ||| || ||||||| |||||||||||||||| |
|
|
| T |
14551999 |
caacaccttataccacaaaccctctctatccactagacacctccaacaccat |
14552050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 10922058 - 10922098
Alignment:
| Q |
188 |
ccattttgaattctaactatctccctccaccaagatgaaca |
228 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
10922058 |
ccatcttgaattctcactatctccctccaccaagaagaaca |
10922098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 19233398 - 19233712
Alignment:
| Q |
16 |
catctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaag |
115 |
Q |
| |
|
|||||||||||| || | |||||||||||| |||||||||||||||||| ||||| |||||| |||||||| ||||| | ||||||||||||||||||| |
|
|
| T |
19233398 |
catctctcccactgacaggtccttatgaatagataaatcatacaacctcataaatcactccatgaacgacactgtccctaaccaacaatccgaccaaaag |
19233497 |
T |
|
| Q |
116 |
aaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctcc |
215 |
Q |
| |
|
|||| |||||| ||||| |||||||||||||| ||||||||||| ||||||||||| || ||||| |||| |||||||||||| ||| ||||||||||| |
|
|
| T |
19233498 |
aaagtatttaagccattgcctaaacgttttgagatactttcttcgaaccaactacctccttccacgcctacaccattttgaattttaattatctccctcc |
19233597 |
T |
|
| Q |
216 |
accaagatgaacatgtcacgccaccctctcttaaccgatctctcttcgccccatagcgagagg-caacaccttaaaccacaaactctccctgtccactaa |
314 |
Q |
| |
|
|||||| ||||| ||||| || ||||| | |||||| | | | | ||||||| ||||||| ||||||| ||||||| |||| |||||| |||||||| |
|
|
| T |
19233598 |
accaagctgaacccgtcacacc-ccctccttcaaccgaccaccttgctccccatatcgagaggacaacaccctaaaccataaaccctccctatccactaa |
19233696 |
T |
|
| Q |
315 |
acacctccaacaccat |
330 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
19233697 |
acacctccaacaccat |
19233712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 16896382 - 16896155
Alignment:
| Q |
16 |
catctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaag |
115 |
Q |
| |
|
||||||||||| || | |||||||||||||||||| ||||||||||| | |||| || |||| |||||| | ||||| | ||||||||||||||||||| |
|
|
| T |
16896382 |
catctctcccattgacaggtccttatgaatcgataagtcatacaaccttcgaaatctcaccatgaacgactctgtccctaaccaacaatccgaccaaaag |
16896283 |
T |
|
| Q |
116 |
aaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctcc |
215 |
Q |
| |
|
|||| |||||| ||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
16896282 |
aaagtatttaagccattgcctaaacgttttgagatactttcttcgaaccaactaccaccttccacacctactccattttgaattttaattatctccctcc |
16896183 |
T |
|
| Q |
216 |
accaagatgaacatgtcacgccaccctc |
243 |
Q |
| |
|
|||||| ||||||||||| ||| ||||| |
|
|
| T |
16896182 |
accaagctgaacatgtcatgcccccctc |
16896155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 87 - 330
Target Start/End: Original strand, 11584481 - 11584725
Alignment:
| Q |
87 |
ccgtccccacccaacaatccgaccaaaagaaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctat |
186 |
Q |
| |
|
||||||||||| | |||||||||||||| | || ||| ||||||||||| |||||||||| |||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
11584481 |
ccgtccccacctagcaatccgaccaaaaaatagtattcaaaccattaccaaaacgttttgttatactttcttcgaaccaactactaccctccacacctat |
11584580 |
T |
|
| Q |
187 |
gccattttgaattctaactatctccctccaccaagatgaacatgtcacgccaccctctcttaaccgatctctcttcgccccatagcgagagg-caacacc |
285 |
Q |
| |
|
|||||||||||| || || ||||||||||||||| | ||| | || ||||||||| || |||| | |||||| | ||||||| ||||||| ||| ||| |
|
|
| T |
11584581 |
tccattttgaattttagctctctccctccaccaagctaaacctatcgtgccaccctccctcaacctacctctctgctccccataccgagaggacaaaacc |
11584680 |
T |
|
| Q |
286 |
ttaaaccacaaactctccctgtccactaaacacctccaacaccat |
330 |
Q |
| |
|
|||||||||| || |||| |||||| ||||||||||||||||||| |
|
|
| T |
11584681 |
ttaaaccacagaccctccatgtccattaaacacctccaacaccat |
11584725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 14608203 - 14608105
Alignment:
| Q |
16 |
catctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaa |
114 |
Q |
| |
|
|||||||||||||| || |||||| | | | || ||||||||||||||| ||||| ||||| | |||||||||| ||| |||||| |||||||| |||| |
|
|
| T |
14608203 |
catctctcccaccgtaacgtccttgttagtggacaaatcatacaacctcttaaatctctccctcaacgacaccgaccctacccaataatccgacaaaaa |
14608105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 37165635 - 37165574
Alignment:
| Q |
53 |
tcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaa |
114 |
Q |
| |
|
||||| |||||| ||||| ||||| | |||| ||||| |||||||||||||||||||||||| |
|
|
| T |
37165635 |
tcatataacctcttaaatctctccctcaacggcaccgaccccacccaacaatccgaccaaaa |
37165574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 19652518 - 19652466
Alignment:
| Q |
62 |
ctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaa |
114 |
Q |
| |
|
||||||||| ||||||| |||||| | ||||||||||||||||| ||||||| |
|
|
| T |
19652518 |
ctcctaaatctctccatcaacgactcattccccacccaacaatcctaccaaaa |
19652466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 4164372 - 4164687
Alignment:
| Q |
16 |
catctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaag |
115 |
Q |
| |
|
|||||||||||| || | |||||||||||||||||| ||||||||||| | |||| || |||| |||||| | ||||| | ||||||||||||||||||| |
|
|
| T |
4164372 |
catctctcccactgacaggtccttatgaatcgataagtcatacaaccttcgaaatctcaccatgaacgactctgtccctaaccaacaatccgaccaaaag |
4164471 |
T |
|
| Q |
116 |
aaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctcc |
215 |
Q |
| |
|
|||| ||| || ||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
4164472 |
aaagtattgaagccattgcctaaacgttttgagatactttcttcgaaccaactaccaccttccacacctactccattttgaattttaattatctccctcc |
4164571 |
T |
|
| Q |
216 |
accaagatgaacatgtcacgccaccctctcttaaccgatctctcttcgccccatagcgagagg-caacaccttaaaccacaaactctccctgtccactaa |
314 |
Q |
| |
|
|||||| ||||| ||||| ||| ||||| | |||||| | | | | ||||||| ||||||| || |||| ||||||| |||| |||||| ||||||| |
|
|
| T |
4164572 |
accaagctgaacctgtcatgcccccctccttcaaccgaccaccttgctccccatatcgagaggacagcaccctaaaccataaaccctccctatccactag |
4164671 |
T |
|
| Q |
315 |
acacctccaacaccat |
330 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4164672 |
acacctccaacaccat |
4164687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 34206663 - 34206978
Alignment:
| Q |
16 |
catctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaag |
115 |
Q |
| |
|
|||||||||||| || | |||||||||||||||||| ||||||||||| | |||| || |||| ||| || | ||||| | ||||||||||||||||||| |
|
|
| T |
34206663 |
catctctcccactgacaggtccttatgaatcgataagtcatacaaccttcgaaatctcaccatgaaccactctgtccctaaccaacaatccgaccaaaag |
34206762 |
T |
|
| Q |
116 |
aaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctcc |
215 |
Q |
| |
|
|||| |||||| ||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||| |||||||||||| ||| |||||| ||| |
|
|
| T |
34206763 |
aaagtatttaagccattgcctaaacgttttgagatactttcttcgaaccaactaccaccttccacacctactccattttgaattttaattatctcactca |
34206862 |
T |
|
| Q |
216 |
accaagatgaacatgtcacgccaccctctcttaaccgatctctcttcgccccatagcgagagg-caacaccttaaaccacaaactctccctgtccactaa |
314 |
Q |
| |
|
|||||| ||||| | ||| ||| ||||| | |||||| | | | | | ||||| | ||||| ||||||| ||||||| |||| |||||| ||||||| |
|
|
| T |
34206863 |
accaagctgaacctatcatgcccccctccttcaaccgaccaccttgctcaccatatcaagaggacaacaccctaaaccataaaccctccctatccactag |
34206962 |
T |
|
| Q |
315 |
acacctccaacaccat |
330 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34206963 |
acacctccaacaccat |
34206978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 155 - 330
Target Start/End: Original strand, 45459784 - 45459960
Alignment:
| Q |
155 |
tcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtcacgccaccctctcttaaccgat |
254 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||| | ||| | ||| | ||||| || || |||||| |
|
|
| T |
45459784 |
tcttcaaaccaactaccaccctccacaccaattccattttgaattttaactatctccctccaccatgctgaccccgtcgcaccaccttccctcaaccgac |
45459883 |
T |
|
| Q |
255 |
ctctcttcgccccatagcgag-aggcaacaccttaaaccacaaactctccctgtccactaaacacctccaacaccat |
330 |
Q |
| |
|
|||| | | ||||||| |||| || |||||||||||||||||| | |||||| |||| ||||||||||||||||||| |
|
|
| T |
45459884 |
ctctatgctccccataacgagaagacaacaccttaaaccacaagccctccctatccattaaacacctccaacaccat |
45459960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 41 - 330
Target Start/End: Complemental strand, 45845127 - 45844842
Alignment:
| Q |
41 |
tgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaagaaagcatttaaaccattacctaaac |
140 |
Q |
| |
|
||||||||||||||||||| |||||||||| | || || |||| |||||||| |||||||||||||| |||||| ||| ||| ||| ||||||| || |
|
|
| T |
45845127 |
tgaatcgataaatcatacagcctcctaaatctttctatgaacgtgaccgtccc-acccaacaatccgatcaaaagtaagtattaaaatagttacctatac |
45845029 |
T |
|
| Q |
141 |
gttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtcacgccacc |
240 |
Q |
| |
|
||||||| ||| | | |||||||||||| |||||||| || ||||| || | | ||||| | || || ||| ||||||| ||| | || ||||| |
|
|
| T |
45845028 |
gttttgacatattattttcaaaccaactcccaccctctactcctat-ccctatcgaatttttacaatttccttccaccactctgaccccatcctaccacc |
45844930 |
T |
|
| Q |
241 |
ctctcttaaccgatctctcttcgccccatagcgagaggcaacaccttaaaccacaaactctccctgtccactaaacacctccaacaccat |
330 |
Q |
| |
|
|||||| | ||| |||||| | | ||||| || || | ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45844929 |
ctctctaagccgccctctctcctctccataacggga--cgacaccttaaaccacaaactgtccctgtccactaaacacctccaacaccat |
45844842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 330
Target Start/End: Complemental strand, 41691568 - 41691252
Alignment:
| Q |
15 |
acatctctcccaccgaaaagtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaa |
114 |
Q |
| |
|
||||||||||||| || || ||||||||||||||||| ||| | | ||||||||| ||||||| || | ||||||||||||||||||||| |||||| |
|
|
| T |
41691568 |
acatctctcccactgacaaatccttatgaatcgataagtcaaaaagtctcctaaatctctccataaaaggttccgtccccacccaacaatccgtccaaaa |
41691469 |
T |
|
| Q |
115 |
gaaagcatttaaaccattacctaaacgttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctc |
214 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| | |||||||||||| |
|
|
| T |
41691468 |
gaaaatatttaagccattacctaaacgttttgttatactttcttcaaaccaactcccaccctccacacctataccattttgaatttttactatctccctc |
41691369 |
T |
|
| Q |
215 |
caccaagatgaacatgtcacgccaccctctcttaaccgatctctcttcgccccatagcgag-aggcaacaccttaaaccacaaactctccctgtccacta |
313 |
Q |
| |
|
||||||| ||| | ||||| ||||| || ||||| || |||| | ||||||| |||| | |||||||||| |||| || | |||||| ||||||| |
|
|
| T |
41691368 |
caccaagctgaccccgtcactccaccttcccttaatcgccctctatgttccccataacgagaatacaacaccttataccataagccctccctatccacta |
41691269 |
T |
|
| Q |
314 |
aacacctccaacaccat |
330 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
41691268 |
aacacctccaacaccat |
41691252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0674 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0674
Description:
Target: scaffold0674; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 330
Target Start/End: Complemental strand, 881 - 591
Alignment:
| Q |
41 |
tgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaagaaagcatttaaaccattacctaaac |
140 |
Q |
| |
|
||||| ||||||||| ||| |||| ||||| ||||||| |||| | | |||||||||| || |||||||||||| ||| ||| ||| ||||||| | || |
|
|
| T |
881 |
tgaatggataaatcaaacagcctcttaaatctctccataaacgtcttcatccccacccagcagtccgaccaaaagtaagtattaaaatcattaccaatac |
782 |
T |
|
| Q |
141 |
gttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtcacgccacc |
240 |
Q |
| |
|
||||||| ||||| |||||||||||| | |||||||| || ||||| || | ||||| | ||||| ||||||||||||| || | || ||||| |
|
|
| T |
781 |
gttttgaaatactctcttcaaaccaattcccaccctctactcctatcccttcacgaatttttactatttccctccaccaagccgaccccatcctaccacc |
682 |
T |
|
| Q |
241 |
ctctcttaaccgatctctcttcgccccatagcgag-aggcaacaccttaaaccacaaactctccctgtccactaaacacctccaacaccat |
330 |
Q |
| |
|
|||||| | ||| ||||| | | ||||| || | || |||||||| |||||||||| | ||||| | |||||||||||||||||||||| |
|
|
| T |
681 |
ctctctaagccgccctctcacctctccataacgggaagacaacacctgaaaccacaaattgtccctattcactaaacacctccaacaccat |
591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 330
Target Start/End: Original strand, 20636658 - 20636948
Alignment:
| Q |
41 |
tgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaagaaagcatttaaaccattacctaaac |
140 |
Q |
| |
|
||||| ||||||||| ||| |||| ||||| ||||||| |||| | | |||||||||| || |||||||||||| ||| ||| ||| ||||||| | || |
|
|
| T |
20636658 |
tgaatggataaatcaaacagcctcttaaatctctccataaacgtcttcatccccacccagcagtccgaccaaaagtaagtattaaaatcattaccaatac |
20636757 |
T |
|
| Q |
141 |
gttttgatatactttcttcaaaccaactaccaccctccacacctatgccattttgaattctaactatctccctccaccaagatgaacatgtcacgccacc |
240 |
Q |
| |
|
||||||| ||||| |||||||||||| | |||||||| || ||||| || | ||||| | ||||| ||||||||||||| || | || ||||| |
|
|
| T |
20636758 |
gttttgaaatactctcttcaaaccaattcccaccctctactcctatcccttcacgaatttttactatttccctccaccaagccgaccccatcctaccacc |
20636857 |
T |
|
| Q |
241 |
ctctcttaaccgatctctcttcgccccatagcgag-aggcaacaccttaaaccacaaactctccctgtccactaaacacctccaacaccat |
330 |
Q |
| |
|
|||||| | ||| ||||| | | ||||| || | || |||||||| |||||||||| | ||||| | |||||||||||||||||||||| |
|
|
| T |
20636858 |
ctctctaagccgccctctcacctctccataacgggaagacaacacctgaaaccacaaattgtccctattcactaaacacctccaacaccat |
20636948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 27336168 - 27336124
Alignment:
| Q |
286 |
ttaaaccacaaactctccctgtccactaaacacctccaacaccat |
330 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
27336168 |
ttaaaccacaaaccatccatatccactaaacacctccaacaccat |
27336124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 50093094 - 50093181
Alignment:
| Q |
50 |
aaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaagaaagcatttaaaccattaccta |
137 |
Q |
| |
|
|||| |||||||||||||||| ||||| | ||| |||||| ||||||||||||| |||||||||| || | | | ||||||||||||| |
|
|
| T |
50093094 |
aaataatacaacctcctaaatctctccctcaacaacaccgaccccacccaacaacccgaccaaaaaaatgtagtaaaaccattaccta |
50093181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 22559568 - 22559470
Alignment:
| Q |
34 |
gtccttatgaatcgataaatcatacaacctcctaaatttctccattaacgacaccgtccccacccaacaatccgaccaaaagaaagcatttaaaccatt |
132 |
Q |
| |
|
|||||||||||| | |||||||||| ||||| |||| ||||||| |||| || || ||||||||||||||||| ||||| || | |||||||||||| |
|
|
| T |
22559568 |
gtccttatgaatggtcaaatcatacatcctccgaaatctctccataaacgtcatcgaccccacccaacaatccgttcaaaaaaacgtatttaaaccatt |
22559470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 22584166 - 22584216
Alignment:
| Q |
279 |
caacaccttaaaccacaaactctccctgtccactaaacacctccaacacca |
329 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
22584166 |
caacaccctaaaccacaaactctccctatccaccaacaacctccaacacca |
22584216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 6633389 - 6633430
Alignment:
| Q |
34 |
gtccttatgaatcgataaatcatacaacctcctaaatttctc |
75 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| |||| |
|
|
| T |
6633389 |
gtccttatgaatagacaaatcatacaacctcctaaatctctc |
6633430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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