View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8368_high_20 (Length: 256)

Name: NF8368_high_20
Description: NF8368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8368_high_20
NF8368_high_20
[»] chr7 (1 HSPs)
chr7 (14-248)||(47895419-47895654)
[»] chr1 (2 HSPs)
chr1 (9-248)||(31213888-31214127)
chr1 (9-248)||(31219643-31219882)
[»] chr6 (1 HSPs)
chr6 (43-146)||(4960067-4960170)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 47895654 - 47895419
Alignment:
Q  14 tcacaacttgctctttttcaacaatcttggtttccctaaggttgacttcagctttcctatactctaaggcttcctcctgcctcctaaacttcttaatgag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47895654 tcacaacttgctctttttcaacaatcttggtttccctaaggttgacttcagctttcctatactctaaggcttcctcctgtctcctaaacttcttaatgag 47895555  T
Q  114 ggatttccgcttttgttccatttcaagctcaaaatac-nnnnnnnnctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttcatctc 212  Q
    |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47895554 ggatttccgcttttgttccatttcaagctcaaaatacttttttttcctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttcatctc 47895455  T
Q  213 cagcattctctttacagaagaatccactttcttctc 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  47895454 cagcattctctttacagaagaatccactttcttctc 47895419  T

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Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 31213888 - 31214127
Alignment:
Q  9 catcatcacaacttgctctttttcaacaatcttggtttccctaaggttgacttcagctttcctatactctaaggcttcctcctgcctcctaaacttctta 108  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  31213888 catcctcacaacttgctctttttcaacaaccttggtttccctaaggttgacttcagcttccctatactctaaggcttcctcctgtctcctaaacttctta 31213987  T
Q  109 atgagggatttccgcttttgttccatttcaagctcaaaatacnnnnnnnnctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31213988 atgagggatttccgcttttgttccatttcaagctcaaaatacatttttttctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttca 31214087  T
Q  209 tctccagcattctctttacagaagaatccactttcttctc 248  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31214088 tctccagcattctctttacagaagaatccactttcttctc 31214127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 31219643 - 31219882
Alignment:
Q  9 catcatcacaacttgctctttttcaacaatcttggtttccctaaggttgacttcagctttcctatactctaaggcttcctcctgcctcctaaacttctta 108  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  31219643 catcctcacaacttgctctttttcaacaaccttggtttccctaaggttgacttcagcttccctatactctaaggcttcctcctgtctcctaaacttctta 31219742  T
Q  109 atgagggatttccgcttttgttccatttcaagctcaaaatacnnnnnnnnctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31219743 atgagggatttccgcttttgttccatttcaagctcaaaatacatttttttctcgtcaaaaagtttctgctgcaactgcaaccataattctttctctttca 31219842  T
Q  209 tctccagcattctctttacagaagaatccactttcttctc 248  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31219843 tctccagcattctctttacagaagaatccactttcttctc 31219882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 4960067 - 4960170
Alignment:
Q  43 gtttccctaaggttgacttcagctttcctatactctaaggcttcctcctgcctcctaaacttcttaatgagggatttccgcttttgttccatttcaagct 142  Q
    ||||||||| ||||||||||   || ||||||||| |||||||||||||  || ||||||| || |   |||||||||||||||||||||||||||||||    
T  4960067 gtttccctatggttgacttcgatttccctatactccaaggcttcctccttgctgctaaactcctcagctagggatttccgcttttgttccatttcaagct 4960166  T
Q  143 caaa 146  Q
    ||||    
T  4960167 caaa 4960170  T

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