View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8368_high_23 (Length: 213)

Name: NF8368_high_23
Description: NF8368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8368_high_23
NF8368_high_23
[»] chr6 (4 HSPs)
chr6 (17-149)||(10795948-10796080)
chr6 (17-149)||(10791710-10791842)
chr6 (17-66)||(30521242-30521291)
chr6 (17-64)||(8875691-8875738)
[»] chr4 (11 HSPs)
chr4 (17-149)||(50077257-50077389)
chr4 (17-149)||(49106587-49106720)
chr4 (17-149)||(49108691-49108824)
chr4 (17-149)||(49533684-49533815)
chr4 (17-99)||(11652450-11652532)
chr4 (17-75)||(3461200-3461258)
chr4 (17-65)||(26984725-26984773)
chr4 (17-65)||(26998798-26998846)
chr4 (17-65)||(48205832-48205880)
chr4 (20-59)||(26982549-26982588)
chr4 (25-61)||(34481155-34481191)
[»] chr1 (20 HSPs)
chr1 (17-149)||(38175588-38175721)
chr1 (17-100)||(14669767-14669850)
chr1 (17-100)||(14706054-14706137)
chr1 (17-100)||(14716257-14716340)
chr1 (17-98)||(28366257-28366338)
chr1 (17-75)||(14654398-14654456)
chr1 (17-75)||(14664189-14664247)
chr1 (17-75)||(14708569-14708627)
chr1 (17-75)||(33988061-33988119)
chr1 (17-73)||(14676625-14676681)
chr1 (17-73)||(14683743-14683799)
chr1 (17-100)||(14674447-14674530)
chr1 (17-100)||(14679825-14679908)
chr1 (17-100)||(14681565-14681648)
chr1 (17-69)||(14667169-14667221)
chr1 (17-66)||(14652525-14652574)
chr1 (17-66)||(14662316-14662365)
chr1 (17-63)||(11872539-11872585)
chr1 (17-60)||(37422175-37422218)
chr1 (25-70)||(28698549-28698594)
[»] chr5 (4 HSPs)
chr5 (17-149)||(7524885-7525017)
chr5 (17-75)||(1716510-1716568)
chr5 (17-99)||(3643607-3643689)
chr5 (17-62)||(4103249-4103294)
[»] chr8 (12 HSPs)
chr8 (17-99)||(41841210-41841292)
chr8 (17-149)||(40054228-40054361)
chr8 (17-99)||(44878950-44879032)
chr8 (17-99)||(44880889-44880971)
chr8 (17-69)||(10944457-10944509)
chr8 (17-64)||(37679757-37679804)
chr8 (23-73)||(42872514-42872564)
chr8 (17-66)||(37682057-37682106)
chr8 (23-99)||(42220909-42220985)
chr8 (20-74)||(42555144-42555198)
chr8 (17-49)||(44582870-44582902)
chr8 (17-99)||(42091988-42092069)
[»] chr2 (20 HSPs)
chr2 (17-141)||(43849973-43850098)
chr2 (17-98)||(8973280-8973361)
chr2 (17-98)||(8979290-8979371)
chr2 (17-100)||(30731974-30732057)
chr2 (17-98)||(9026754-9026835)
chr2 (17-99)||(32918048-32918129)
chr2 (17-98)||(8984661-8984742)
chr2 (17-74)||(9023439-9023496)
chr2 (17-98)||(9032021-9032102)
chr2 (17-98)||(9020815-9020896)
chr2 (17-98)||(9030366-9030447)
chr2 (17-69)||(9008018-9008070)
chr2 (17-67)||(2841075-2841125)
chr2 (17-69)||(30733985-30734037)
chr2 (17-98)||(8988423-8988504)
chr2 (17-98)||(8992116-8992197)
chr2 (17-98)||(9016461-9016542)
chr2 (17-64)||(19232457-19232504)
chr2 (28-63)||(39814115-39814150)
chr2 (17-59)||(10763936-10763978)
[»] chr3 (1 HSPs)
chr3 (18-64)||(15758562-15758608)
[»] chr7 (1 HSPs)
chr7 (17-66)||(27134511-27134560)


Alignment Details
Target: chr6 (Bit Score: 133; Significance: 2e-69; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 10795948 - 10796080
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatcaactgtcactcagtttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10795948 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatcaactgtcactcagtttc 10796047  T
Q  117 tttcttcattacccgatgtgggacttatatgca 149  Q
    |||||||||||||||||||||||||||||||||    
T  10796048 tttcttcattacccgatgtgggacttatatgca 10796080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 10791710 - 10791842
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatcaactgtcactcagtttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  10791710 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagttggcttctgcttttatatcaactgtcacttagtttc 10791809  T
Q  117 tttcttcattacccgatgtgggacttatatgca 149  Q
    ||||||||||||||||| |||||||||||||||    
T  10791810 tttcttcattacccgatatgggacttatatgca 10791842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 30521291 - 30521242
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 66  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  30521291 aagaacagatactacacttgatctcagccaaaaggtcgagaaaggtatga 30521242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 8875738 - 8875691
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 64  Q
    ||||||||||| |||||||||||||||||||||||||| |||| ||||    
T  8875738 aagaacagatattacacttgatcttagccaaaaggccgggaaatgtat 8875691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 50077257 - 50077389
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatcaactgtcactcagtttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50077257 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatcaactgtcacttagtttc 50077356  T
Q  117 tttcttcattacccgatgtgggacttatatgca 149  Q
    ||||||||||||||||| |||||||||||||||    
T  50077357 tttcttcattacccgatatgggacttatatgca 50077389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 49106587 - 49106720
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatcaactgtc-actcagttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||| | ||||||     
T  49106587 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagggtggctggcttctgcttttatatcaactgtctaatcagttc 49106686  T
Q  116 ctttcttcattacccgatgtgggacttatatgca 149  Q
    ||||||||||||||||||||||||||||||||||    
T  49106687 ctttcttcattacccgatgtgggacttatatgca 49106720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 49108691 - 49108824
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatcaactgtc-actcagttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||| |||||||||||||||| | ||||||     
T  49108691 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatataggctggcttctgattttatatcaactgtctattcagttc 49108790  T
Q  116 ctttcttcattacccgatgtgggacttatatgca 149  Q
    ||||| | ||||||||||||||||||||||||||    
T  49108791 ctttccttattacccgatgtgggacttatatgca 49108824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 49533684 - 49533815
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatcaactgtc-actcagttt 115  Q
    ||||||||||| | |||||||||||||||||  |||||||||||||||| |||| || ||| ||||||||||| |||||||||||||||| | |||||||    
T  49533684 aagaacagata-tgcacttgatcttagccaag-ggccgagaaaggtatgggttggaataagggctggcttctggttttatatcaactgtctaatcagttt 49533781  T
Q  116 ctttcttcattacccgatgtgggacttatatgca 149  Q
    |||||||||||| |||||||||||||| ||||||    
T  49533782 ctttcttcattagccgatgtgggacttttatgca 49533815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 11652450 - 11652532
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||| |||||||||    
T  11652450 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgggttggcttctggttttatatc 11652532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 3461200 - 3461258
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3461200 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgaattgaaaga 3461258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 26984725 - 26984773
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26984725 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 26984773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 26998798 - 26998846
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26998798 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 26998846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 48205880 - 48205832
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 65  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  48205880 aagaacagatactacacttaatcttagctaaaaggccgagaaaggtatg 48205832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 26982588 - 26982549
Alignment:
Q  20 aacagatactacacttgatcttagccaaaaggccgagaaa 59  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  26982588 aacagatgctacacttgatcttagccaagaggccgagaaa 26982549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 34481155 - 34481191
Alignment:
Q  25 atactacacttgatcttagccaaaaggccgagaaagg 61  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  34481155 atactacactcgatcttagccaaaaggctgagaaagg 34481191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 38175588 - 38175721
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa-gaagagctggcttctgcttttatatcaactgt-cactcagtt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  || || ||||||||||||| ||||||  ||| ||||    
T  38175588 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatgaag-cctcgcatctgcttttatatgaactgtatacttagtt 38175686  T
Q  115 tctttcttcattacccgatgtgggacttatatgca 149  Q
    |||||||||||||||||||||||||||||||||||    
T  38175687 tctttcttcattacccgatgtgggacttatatgca 38175721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 14669767 - 14669850
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | | ||||||||||||||    
T  14669767 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatca 14669850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 14706137 - 14706054
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | | ||||||||||||||    
T  14706137 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcggtgctgcttttatatca 14706054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 14716340 - 14716257
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | | ||||||||||||||    
T  14716340 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaactcggtgctgcttttatatca 14716257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 28366257 - 28366338
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatat 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | || |||||||||||||    
T  28366257 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaggggttcgcatctgcttttatat 28366338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 14654398 - 14654456
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654398 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 14654456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 14664189 - 14664247
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664189 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 14664247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 14708627 - 14708569
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14708627 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 14708569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 33988119 - 33988061
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33988119 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 33988061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 14676681 - 14676625
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676681 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 14676625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 14683799 - 14683743
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14683799 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 14683743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 14674530 - 14674447
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||| | | ||||||||||||||    
T  14674530 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttggaagattggctaggtgctgcttttatatca 14674447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 14679908 - 14679825
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||| | | ||||||||||||||    
T  14679908 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttggaagattggctaggtgctgcttttatatca 14679825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 14681648 - 14681565
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | | ||| | | ||||||||||||||    
T  14681648 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtataagttgaaaaatgggctaggtgctgcttttatatca 14681565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 14667169 - 14667221
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14667169 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 14667221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 14652574 - 14652525
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652574 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14652525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 14662365 - 14662316
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662365 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 14662316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 11872539 - 11872585
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggta 63  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  11872539 aagaacagatagtacacttgatcttagtcaaaaggccgagaaaggta 11872585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 37422218 - 37422175
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaag 60  Q
    ||||||| || |||||||||||||||||||||||||||||||||    
T  37422218 aagaacatatgctacacttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 28698594 - 28698549
Alignment:
Q  25 atactacacttgatcttagccaaaaggccgagaaaggtatgagttg 70  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||||    
T  28698594 atactacatttgatcttagccaaaagaccgagaaatgtatgagttg 28698549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 7525017 - 7524885
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatcaactgtc-actcagttt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || | || || | |||||||||||| |||||| ||||||||     
T  7525017 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgacttgaaacaacaccttgcat-tgcttttatatccactgtctactcagttc 7524919  T
Q  116 ctttcttcattacccgatgtgggacttatatgca 149  Q
     |||||||||||||||||||||||||| ||||||    
T  7524918 ttttcttcattacccgatgtgggacttttatgca 7524885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 1716510 - 1716568
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1716510 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaaga 1716568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 3643689 - 3643607
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |   || ||||||| |||||||||    
T  3643689 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgaatttaaagtaagtctcgcttctgtttttatatc 3643607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 4103294 - 4103249
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggt 62  Q
    |||||||||||||||||||||||||| |||||| || |||||||||    
T  4103294 aagaacagatactacacttgatcttaaccaaaatgctgagaaaggt 4103249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 41841210 - 41841292
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||    
T  41841210 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggttggcttctgcttttatatc 41841292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 40054361 - 40054228
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatcaactgtc-actcagttt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||  ||  || || ||| |||||||||| | |||| ||||||||     
T  40054361 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgaattaaaatgaggcctcgcatcttcttttatatccagtgtctactcagttc 40054262  T
Q  116 ctttcttcattacccgatgtgggacttatatgca 149  Q
    ||||||||||||  ||||||||||||| ||||||    
T  40054261 ctttcttcattattcgatgtgggacttttatgca 40054228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 44879032 - 44878950
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||| || ||||||||||||||    
T  44879032 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaatgttgggctcgcctctgcttttatatc 44878950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 44880889 - 44880971
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||| || ||||||||||||||    
T  44880889 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaatgttgggctcgcctctgcttttatatc 44880971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 10944457 - 10944509
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 69  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10944457 aagaacagatactacacttgatcttagccaaaaggtcgagaaaggtatgagtt 10944509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 37679804 - 37679757
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37679804 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 37679757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 42872514 - 42872564
Alignment:
Q  23 agatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 73  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42872514 agatactacacttaatcttagccaaaaggccgagaaaggtatgagttgaaa 42872564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 37682106 - 37682057
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 66  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37682106 aagaacagatactacacttgatcttagccaaaaggccgagaaatgtatga 37682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 42220909 - 42220985
Alignment:
Q  23 agatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatc 99  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||||    ||| || ||||||||||||||    
T  42220909 agatactacacttgatcttagccaaaagaccgaaaaatgtatgagttgaaagctatgctcgcctctgcttttatatc 42220985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 42555144 - 42555198
Alignment:
Q  20 aacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 74  Q
    ||||||| || ||||||||||||||||||||  | ||||||||||||||||||||    
T  42555144 aacagattctgcacttgatcttagccaaaagatcaagaaaggtatgagttgaaag 42555198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 44582902 - 44582870
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaa 49  Q
    |||||||||||||||||||||||||||||||||    
T  44582902 aagaacagatactacacttgatcttagccaaaa 44582870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 42092069 - 42091988
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatc 99  Q
    ||||||| ||| ||||||| || ||||| |||||||  ||||||||||||||| ||||| ||| | ||||||| |||||||||    
T  42092069 aagaacaaatattacacttaattttagc-aaaaggcaaagaaaggtatgagtttaaagatgagtttgcttctggttttatatc 42091988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 43850098 - 43849973
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagct-ggcttctgcttttatatcaactgtc-actcagtt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  || ||||||||||||||  ||||| |||||| |    
T  43850098 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaataag-gctacgcatctgcttttatatcctctgtctactcagat 43850000  T
Q  115 tctttcttcattacccgatgtgggact 141  Q
     ||||||| ||||||||||||||||||    
T  43849999 cctttcttgattacccgatgtgggact 43849973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 8973361 - 8973280
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatat 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||||||||    
T  8973361 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaactcgcttatgcttttatat 8973280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 8979371 - 8979290
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatat 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||||||||    
T  8979371 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaacttgcttatgcttttatat 8979290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 30732057 - 30731974
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | | ||||||||||||||    
T  30732057 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatca 30731974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 9026835 - 9026754
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatat 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  | |||| |||||||||||    
T  9026835 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaattcgcttatgcttttatat 9026754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 32918129 - 32918048
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatatc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || ||| |||||||||||||    
T  32918129 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaatgtaga-ctagctgctgcttttatatc 32918048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 8984742 - 8984661
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatat 98  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||| |||||||||||    
T  8984742 aagaacaaatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatatgaacttgcttatgcttttatat 8984661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 9023496 - 9023439
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9023496 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 9023439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 9032102 - 9032021
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatat 98  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||  | |||| |||||||||||    
T  9032102 aagaacagatactacacttgatcttaaccaaaaggccgagaaaggtatgagttgaaagatgaattcgcttatgcttttatat 9032021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 9020896 - 9020815
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatat 98  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| || || |||| || ||||||||    
T  9020896 aagaacagatactacacttgatcttagccaaaaggccgagaaatgtatgaattgaaagatgaactcgcttatggttttatat 9020815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 9030447 - 9030366
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatat 98  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||| || || |||| |||||||||||    
T  9030447 aagaacagatactacacttgatcttagccaaaaggccaagaaaaatatgagttgaaagatgaacttgcttatgcttttatat 9030366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 9008070 - 9008018
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9008070 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 9008018  T

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Target: chr2; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 2841075 - 2841125
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgag 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2841075 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgag 2841125  T

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Target: chr2; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 30734037 - 30733985
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30734037 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtataagtt 30733985  T

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Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 8988504 - 8988423
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatat 98  Q
    ||||||| ||||||||||||||||| ||||||||||| |||| ||||| |||||||||| || || |||| |||||||||||    
T  8988504 aagaacaaatactacacttgatcttcgccaaaaggccaagaatggtataagttgaaagatgaactcgcttatgcttttatat 8988423  T

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Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 8992197 - 8992116
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatat 98  Q
    ||||||| |||||||||||||||||||||||||| | |||||||| ||||||| ||||| || || |||| |||||||||||    
T  8992197 aagaacatatactacacttgatcttagccaaaagactgagaaaggcatgagttaaaagacgaactcgcttatgcttttatat 8992116  T

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Target: chr2; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 9016542 - 9016461
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatat 98  Q
    |||||||||||||||| |||||||||||||||||| |||  |||||||||||| ||||| || || |||| |||||||||||    
T  9016542 aagaacagatactacatttgatcttagccaaaaggtcgaataaggtatgagttaaaagatgaactcgcttatgcttttatat 9016461  T

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Target: chr2; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 19232457 - 19232504
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 64  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19232457 aagaacagatattacacttgatcttagccaaaaggccgagaaaggtat 19232504  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 39814150 - 39814115
Alignment:
Q  28 ctacacttgatcttagccaaaaggccgagaaaggta 63  Q
    |||||||||||| |||||||||||||||||||||||    
T  39814150 ctacacttgatcatagccaaaaggccgagaaaggta 39814115  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 10763936 - 10763978
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaa 59  Q
    ||||||| ||||||||||||||||||| |||||| ||||||||    
T  10763936 aagaacatatactacacttgatcttagtcaaaagaccgagaaa 10763978  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 15758562 - 15758608
Alignment:
Q  18 agaacagatactacacttgatcttagccaaaaggccgagaaaggtat 64  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||    
T  15758562 agaacagatattacacttgatcttagccaaaaggctgagaaaggtat 15758608  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 27134560 - 27134511
Alignment:
Q  17 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 66  Q
    |||||||||||||| | ||||||||||  |||||||||| ||||||||||    
T  27134560 aagaacagatactagatttgatcttagtgaaaaggccgaaaaaggtatga 27134511  T

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