View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8368_high_3 (Length: 696)

Name: NF8368_high_3
Description: NF8368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8368_high_3
NF8368_high_3
[»] chr7 (1 HSPs)
chr7 (16-681)||(41878412-41879078)


Alignment Details
Target: chr7 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 16 - 681
Target Start/End: Complemental strand, 41879078 - 41878412
Alignment:
Q  16 acatcaactctagcaacaccatctctttccccaccaaccttagcaacatcaacctcaccaacaatcaactccttagcagcatcctctccatcttcctcgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41879078 acatcaactctagcaacaccatctctttccccaccaaccttagcaacatcaacatcaccaacaatcaactccttagcagcatcctctccatcttcctcgt 41878979  T
Q  116 ctacataattaggatcattctcatccatagccgccggcgccggatcaagcatattatcaaccatatcagccggaccttcccaagtaaacttaccaccacg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41878978 ctacataattaggatcattctcatccatagccgccggcgccggatcaagcatattatcaaccatatcagccggaccttcccaagtaaacttaccaccacg 41878879  T
Q  216 accagacttcggcggtccgcggccaatgcctatgccgtcgacagggtggcggtccagacgttggacaccgttgttgatgagtttcttctcaacatgtttg 315  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41878878 accagacttcggcggtccacggccaatgcctatgccgtcgacagggtggcggtccagacgttggacaccgttgttgatgagtttcttctccacatgtttg 41878779  T
Q  316 attgtgtctatgttgtgtgtgttgagttctgttttttcaactctcttttttccttcttcgtcgtgactcactgctcttattgttaccgtctcttgtttct 415  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41878778 attgtgtctatgttgtgtgtgtttagttctgttttttcaactctcttttttccttcttcgtcgtgactcactgctcttattgttaccgtctcttgtttct 41878679  T
Q  416 cgtcgattggcttcattgttgcttgctacaaagaaag-ttatttatgtttatgatgtatgtcataaaatacaaagtgtaaggtggtttttatttatagga 514  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  41878678 cgtcgattggcttcattgctgcttgctacaaagaaagtttatttatgtttatgatgtatgttatacaatacaaagtgcaaggtggtttttatttatagga 41878579  T
Q  515 ggtttatacaatacaaagttagaatgtgctggaagtaatataggttgagaattcttgtatttgctagaaaattctatgctacgtgacacagctatgcact 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41878578 ggtttatacaatacaaagttagaatgtgctggaagtaatataggttgagaattcttgtatttgctagaaaattctatgctacgtgacacagctatgcact 41878479  T
Q  615 gtcacgtgtaagtaataagattgatcatattaattaacatgttcattcattttctacacactatttg 681  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41878478 gtcacgtgtaagtaataagattgatcatattaattaacatgttcattcattttctacacactatttg 41878412  T

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