View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8368_high_5 (Length: 679)

Name: NF8368_high_5
Description: NF8368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8368_high_5
NF8368_high_5
[»] chr5 (4 HSPs)
chr5 (14-317)||(18049575-18049887)
chr5 (372-662)||(18049148-18049439)
chr5 (601-654)||(19461990-19462043)
chr5 (385-433)||(22253761-22253809)
[»] chr1 (4 HSPs)
chr1 (278-323)||(33843143-33843188)
chr1 (278-323)||(33950791-33950836)
chr1 (278-323)||(11333741-11333786)
chr1 (278-323)||(11491762-11491807)
[»] chr7 (1 HSPs)
chr7 (268-319)||(4232295-4232346)
[»] chr6 (2 HSPs)
chr6 (213-247)||(34701147-34701181)
chr6 (254-323)||(4577737-4577806)
[»] chr4 (2 HSPs)
chr4 (213-247)||(39669523-39669557)
chr4 (278-323)||(29256936-29256981)
[»] chr2 (2 HSPs)
chr2 (213-247)||(2145768-2145802)
chr2 (218-246)||(5506982-5507010)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 18049887 - 18049575
Alignment:
Q  14 gtttggtgttattgcgtggaaggaaaaggaagtcaacttaaggggtgctttgaccggttcatagttttgagcaggctagactataatactactaagactt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  18049887 gtttggtgttattgcgtggaaggaaaaggaagtcaacttaaggggtgctttgaccggttcttagttttgagcaggctagactataataatactaagactt 18049788  T
Q  114 caaaatttctaggctagactatgataaattacaaaagggttatgattctaaattaaaggcaattatttgggcgagtaaagtgagccaagttaggtactag 213  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| || |||  |    
T  18049787 caaaatttctaggctagactatgataaattacaaaagggtaatgattctaaattaaaggcaattatttgggcgagtagagtgagctaagtcagttacccg 18049688  T
Q  214 tgaacttagttcagttggtaggaacattgcataa---------gggttagggtttgaacaccagacactcaaattcttcacgtttaattgcgtgagctcc 304  Q
    ||| ||||| ||| |||||||| | |||||||||         |||||  |||| |||||||  ||||| ||||||| ||| ||||||||||||||||||    
T  18049687 tgagcttagctcaattggtagggatattgcataatttatacaggggttgaggttcgaacaccgaacactaaaattctccacatttaattgcgtgagctcc 18049588  T
Q  305 agtcactagacta 317  Q
    || ||||| ||||    
T  18049587 agccactatacta 18049575  T

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Target: chr5; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 372 - 662
Target Start/End: Complemental strand, 18049439 - 18049148
Alignment:
Q  372 agatgcgaagtcgaagcgaggagttccatagaatttcaaggaagaagcaagagcatattcgctagacgagccacattttgtccatggaagtaaggtggtg 471  Q
    ||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  18049439 agatgcgaaatcaaagcgaggagttccatagagtttcaaggaagaagcaagagcatatttgctagacgagccacattttatccatggaagtaaggcggtg 18049340  T
Q  472 ttagtgacctttgctagacgaatttgcatttttctaacatgtatataaatagttgaaaacaatattcagaatacatctttacaatcatagactcatattt 571  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  18049339 ttagtgacctttgctagacgaatttgcatttttctgacatgtatataaatagttgtaaacaatattcagaatacatctttacaatcatagactcgtattt 18049240  T
Q  572 nnnnnnnnnnnnnnnnnnnnnnnataaagattcacca-ttggagagcattggaggtttggattcaagctttgcatgattttccctttatatt 662  Q
                           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18049239 agagagagagaacaaagaggagaataaagattcaccatttggagagcattggaggtttggattcaagctttgcatgattttccctttatatt 18049148  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 601 - 654
Target Start/End: Original strand, 19461990 - 19462043
Alignment:
Q  601 attcaccattggagagcattggaggtttggattcaagctttgcatgattttccc 654  Q
    |||||||||||| ||||||| ||||||| |||||||| |||| |||||| ||||    
T  19461990 attcaccattggtgagcattagaggttttgattcaagatttgaatgattctccc 19462043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 385 - 433
Target Start/End: Complemental strand, 22253809 - 22253761
Alignment:
Q  385 aagcgaggagttccatagaatttcaaggaagaagcaagagcatattcgc 433  Q
    ||||||||||||| | ||| ||||| |||||||||||||||| ||||||    
T  22253809 aagcgaggagttctagagagtttcagggaagaagcaagagcagattcgc 22253761  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 33843188 - 33843143
Alignment:
Q  278 ttcttcacgtttaattgcgtgagctccagtcactagactactagac 323  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||    
T  33843188 ttcttcacgtttaattgtgtgagctccagccaatagactactagac 33843143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 33950791 - 33950836
Alignment:
Q  278 ttcttcacgtttaattgcgtgagctccagtcactagactactagac 323  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||    
T  33950791 ttcttcacgtttaattgtgtgagctccagccaatagactactagac 33950836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 11333741 - 11333786
Alignment:
Q  278 ttcttcacgtttaattgcgtgagctccagtcactagactactagac 323  Q
    |||| ||| |||||||| |||||||| |||||||||||||||||||    
T  11333741 ttctccacatttaattgtgtgagctctagtcactagactactagac 11333786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 11491762 - 11491807
Alignment:
Q  278 ttcttcacgtttaattgcgtgagctccagtcactagactactagac 323  Q
    |||| ||| |||||||| |||||||| |||||||||||||||||||    
T  11491762 ttctccacatttaattgtgtgagctctagtcactagactactagac 11491807  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 4232346 - 4232295
Alignment:
Q  268 gacactcaaattcttcacgtttaattgcgtgagctccagtcactagactact 319  Q
    ||||||| | ||||||||||||||||| ||||| || |||||||||||||||    
T  4232346 gacactccacttcttcacgtttaattgtgtgagttctagtcactagactact 4232295  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 34701147 - 34701181
Alignment:
Q  213 gtgaacttagttcagttggtaggaacattgcataa 247  Q
    ||||||||||||||||||||||||||| |||||||    
T  34701147 gtgaacttagttcagttggtaggaacaatgcataa 34701181  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 4577806 - 4577737
Alignment:
Q  254 gggtttgaacaccagacactcaaattcttcacgtttaattgcgtgagctccagtcactagactactagac 323  Q
    |||||||||| ||||| || | | |||||||  |||||||| ||||||||||| |||||| |||||||||    
T  4577806 gggtttgaaccccagataccccacttcttcaaatttaattgtgtgagctccagacactaggctactagac 4577737  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 39669557 - 39669523
Alignment:
Q  213 gtgaacttagttcagttggtaggaacattgcataa 247  Q
    |||||||||| ||||||||||||||||||||||||    
T  39669557 gtgaacttagctcagttggtaggaacattgcataa 39669523  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 29256981 - 29256936
Alignment:
Q  278 ttcttcacgtttaattgcgtgagctccagtcactagactactagac 323  Q
    |||| ||| |||||||| ||||||||| ||||||||||||||||||    
T  29256981 ttctccacatttaattgtgtgagctccggtcactagactactagac 29256936  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 2145802 - 2145768
Alignment:
Q  213 gtgaacttagttcagttggtaggaacattgcataa 247  Q
    ||||||||||||||||||||||| |||||||||||    
T  2145802 gtgaacttagttcagttggtagggacattgcataa 2145768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 5507010 - 5506982
Alignment:
Q  218 cttagttcagttggtaggaacattgcata 246  Q
    |||||||||||||||||||||||||||||    
T  5507010 cttagttcagttggtaggaacattgcata 5506982  T

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