View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8368_low_10 (Length: 501)
Name: NF8368_low_10
Description: NF8368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8368_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 222 - 490
Target Start/End: Original strand, 16462340 - 16462609
Alignment:
| Q |
222 |
aagcacaaacactagacactgatatgtagacaccgatattaatcaaagaaaacataactgtcagatacttaacacatgttggatattggacgcggatttg |
321 |
Q |
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| T |
16462340 |
aagcacaaacactagacactgatatttagacaccgatattaatcaaagaaaacataactgtcagatacttaacacatgttggatattagacgcgcatttg |
16462439 |
T |
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| Q |
322 |
atctaaaattaattcaattttccgtttgtttgtcttgtcagggtgttggcattaacttctcaaaccttactcgctcaacgatgttttctcttgtttttgg |
421 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16462440 |
atctaaaattaattcaattttccgtttgtttgtgttgtcagggtgttggcattaacttctcaaaccttactcgctcaacgatgttttctcttgtttttgg |
16462539 |
T |
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| Q |
422 |
agaggacgttgctgcc-aaaaaacaacaaaatcagaagctaggtacataattgtgatactaattgttctt |
490 |
Q |
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| T |
16462540 |
agaggacgttgctgccaaaaaaacaacaaaatcagaagctaggtacataattgtgatactaattgttctt |
16462609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 16462095 - 16462301
Alignment:
| Q |
18 |
ctattggagcatttcatgcagaacaaaggggtgtcatggttgtgtgttcagctggaaatgatggtcctgatcattacactgttgtcaacacagcaccatg |
117 |
Q |
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| T |
16462095 |
ctattggagcatttcatgcagaacaaaggggtgtcatggttgtgtgttcagctggaaatgaaggtcctgatcattacactgttgtcaacacagcaccatg |
16462194 |
T |
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| Q |
118 |
gatatttacggttgcagcctctaatatcgataggaatttccagtcaactgttgtccttggaaacggaaaatcttataaagtaagtttcttgatctccaag |
217 |
Q |
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| T |
16462195 |
gatatttacggttgcagcctctaatatcgataggaatttccagtcaactgttgtccttggaaacggaaaagcttataaagtaagtttcttgatctccaag |
16462294 |
T |
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| Q |
218 |
ccaaaag |
224 |
Q |
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||||||| |
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| T |
16462295 |
ccaaaag |
16462301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 16492003 - 16492196
Alignment:
| Q |
20 |
attggagcatttcatgcagaacaaaggggtgtcatggttgtgtgttcagctggaaatgatggtcctgatcattacactgttgtcaacacagcaccatgga |
119 |
Q |
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||||||||||||||||| ||||||||||| |||| |||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||||| |
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| T |
16492003 |
attggagcatttcatgccgaacaaaggggggtcacggttgtgtgttcagctgggaatgatggtcctgatcctaacacagttgtcaacacagcaccatgga |
16492102 |
T |
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| Q |
120 |
tatttacggttgcagcctctaatatcgataggaatttccagtcaactgttgtccttggaaacggaaaatcttataaagtaagtttcttgatctc |
213 |
Q |
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||||||| |||||||| |||||||| |||||||| || ||||||||| ||||||||||||| |||||| || ||||||||||||||||||| |
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| T |
16492103 |
tatttacagttgcagcttctaatattgataggaactttcagtcaactattgtccttggaaatggaaaaagtttccaagtaagtttcttgatctc |
16492196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 335 - 436
Target Start/End: Original strand, 16492393 - 16492494
Alignment:
| Q |
335 |
tcaattttccgtttgtttgtcttgtcagggtgttggcattaacttctcaaaccttactcgctcaacgatgttttctcttgtttttggagaggacgttgct |
434 |
Q |
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||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| |||||| |
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| T |
16492393 |
tcaattttctctttgtttgtgttgtcagggtgctggcattaacttctcaaaccttacacgctcaacgatgcattctcttgtctttggagaggaagttgct |
16492492 |
T |
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| Q |
435 |
gc |
436 |
Q |
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|| |
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| T |
16492493 |
gc |
16492494 |
T |
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