View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8368_low_12 (Length: 477)
Name: NF8368_low_12
Description: NF8368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8368_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 36 - 459
Target Start/End: Original strand, 12944909 - 12945332
Alignment:
| Q |
36 |
cagagacagcagagagtataaatttcttaacattttcaagcaaaacttgtgccttagaacgatcaaagatttccacagcatgatacccatcctcatcaaa |
135 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12944909 |
cagaaacagcagagagtataaatttcttaacattttcaagcaaaacttgtgccttagaacgatcaaagatttccacagcatgatacccatcctcatcaaa |
12945008 |
T |
|
| Q |
136 |
acaggactccacgtgcaccccgcgtgctgcaaaaatcttcgccagctccttttgcttatccaccaatggatcaccaccgtagccatttacaaaacacctt |
235 |
Q |
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||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||| |
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| T |
12945009 |
acaggactccacgtgcaccccacgtgccgccaaaatcttcgccagctccttctgcttatccaccaatggatctccaccgtagccattaacaaagcacctt |
12945108 |
T |
|
| Q |
236 |
ggcaaccgtcctatcttttcaccgtatacgtgatccaaagttgttggattgcaatactcgtggtccctgtctttgccctcaggcaaacacagggaccaca |
335 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| |
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| T |
12945109 |
ggcaaccgtccaatcttttcaccgtatacgtgatccaaagttgttggattgcaatactcgtggtccctgtctttgccctcgggcaaacataggaaccaca |
12945208 |
T |
|
| Q |
336 |
tgagatcacctgctggtaatggtaatatacgatcgttgaccaaacgaagctcagattccgttctttggaccccactaaaaaatggatatttcattatgat |
435 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12945209 |
tgaggtcacctgctggtaatggtaatatacgatcgttgaccaaacgaagctcagattccgttctctggaccccactaaaaaatggatatttcattatgat |
12945308 |
T |
|
| Q |
436 |
ccctcggattttaatgggagagag |
459 |
Q |
| |
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|||||||||||||||| ||||||| |
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| T |
12945309 |
ccctcggattttaatgtgagagag |
12945332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 53 - 459
Target Start/End: Original strand, 12937254 - 12937660
Alignment:
| Q |
53 |
ataaatttcttaacattttcaagcaaaacttgtgccttagaacgatcaaagatttccacagcatgatacccatcctcatcaaaacaggactccacgtgca |
152 |
Q |
| |
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|||||||||||||| | ||||| || |||||||||||| | ||||||||| ||||||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
12937254 |
ataaatttcttaacgtaatcaagtaatgcttgtgccttagcaggatcaaagagttccacagcatgaaacccatcctcacaaaaaacagactccacgtgca |
12937353 |
T |
|
| Q |
153 |
ccccgcgtgctgcaaaaatcttcgccagctccttttgcttatccaccaatggatcaccaccgtagccatttacaaaacaccttggcaaccgtcctatctt |
252 |
Q |
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|||| ||||| | ||||||||| | |||||||||||| |||||||||| ||||| ||||||||||| || ||||| ||||| |||| |||||| ||||| |
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| T |
12937354 |
ccccacgtgcctccaaaatcttcactagctccttttgcctatccaccaagggatccccaccgtagccgttaacaaagcacctcggcagccgtccgatctt |
12937453 |
T |
|
| Q |
253 |
ttcaccgtatacgtgatccaaagttgttggattgcaatactcgtggtccctgtctttgccctcaggcaaacacagggaccacatgagatcacctgctggt |
352 |
Q |
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||||| | || |||| || | ||||||| |||||| |||| |||| ||| | |||||||||||| | |||| |||||||||||||| ||||| | |
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| T |
12937454 |
ctcaccatgtatcacatccgaaacttttggattacaatacacgtgatcccgatctgtaccctcaggcaaagatagggcccacatgagatcacttgctgat |
12937553 |
T |
|
| Q |
353 |
aatggtaatatacgatcgttgaccaaacgaagctcagattccgttctttggaccccactaaaaaatggatatttcattatgatccctcggattttaatgg |
452 |
Q |
| |
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|| |||| |||| |||||| | |||||||||||||||| ||||| || ||||||| |||||| ||| |||||||| | |||| |||| |||| | |
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| T |
12937554 |
aagggtagtatattatcgttaatgaaacgaagctcagattttgttctctgaaccccaccaaaaaacggagcattcattataagcccttggatcttaagag |
12937653 |
T |
|
| Q |
453 |
gagagag |
459 |
Q |
| |
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||||||| |
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|
| T |
12937654 |
gagagag |
12937660 |
T |
|
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