View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8368_low_14 (Length: 430)
Name: NF8368_low_14
Description: NF8368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8368_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 386
Target Start/End: Complemental strand, 52301681 - 52301302
Alignment:
| Q |
8 |
cagaacctgtggcagctatggcaagtatatcagcacatgagacaactccgctacacgcactctccactgccgttttgattgtatcaacaacatcaaatcc |
107 |
Q |
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| T |
52301681 |
cagaatctctggcagctatggcaagtatatcagcacatgagacaactccgctacacgcactttccactgccgttttgattgtatcaacaacatcaaatcc |
52301582 |
T |
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| Q |
108 |
tctaacagagttgatattaggaaatgcagacttttcaaaatcatcaccaccatctaataatattgatccatcacaaccctgataatcaaaataataattt |
207 |
Q |
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| T |
52301581 |
tctaacagagttgatattaggaaatgcagacttttcaaaatcatcgccaccatctaataatattgatccatcacaaccctgataatcaaaataataattt |
52301482 |
T |
|
| Q |
208 |
gaaagtgaatccttgttataaaaaatgttgtaaaatgctaaatgtcacaaaatattgttatcacgaatttgtacgttgtttcggactttgtcatgtttgt |
307 |
Q |
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| T |
52301481 |
gaaagtgaatccttgttataaaaaatgttgtaaaatgctaaatgtcacaaaatattgttatcacgaatttgtacgttgttttggactttgtcatgtttgt |
52301382 |
T |
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| Q |
308 |
gagaaataatgttaccgg-aaaaattcgctaggtagttccttcgctagaaataacattttccttaatactatgcatgcat |
386 |
Q |
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| T |
52301381 |
gagaaataatgtttccggaaaaaattcgctaggtagttccttcgctagaaatagcatttttcttaatactatgtatgcat |
52301302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 52301284 - 52301235
Alignment:
| Q |
381 |
atgcatgcatgtacatgtatctcaagtaattaagcttacattgacaaagc |
430 |
Q |
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| T |
52301284 |
atgcatgcatgtacatgtatctcaagtaattaagcttacattgacaaagc |
52301235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 43189030 - 43188987
Alignment:
| Q |
14 |
ctgtggcagctatggcaagtatatcagcacatgagacaactccg |
57 |
Q |
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| T |
43189030 |
ctgtggcagcaatggcaaggatatcagcacatgatacaactccg |
43188987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 17547678 - 17547766
Alignment:
| Q |
23 |
ctatggcaagtatatcagcacatgagacaactccgctacacgcactctccactgccgttttgattgtatcaacaacatcaaatcctcta |
111 |
Q |
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| T |
17547678 |
ctatggctaatatatcagcacaagacacaactccactacatgaactctccactgaacttttgattctatctatgacttcaaatcctcta |
17547766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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