View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8368_low_15 (Length: 404)

Name: NF8368_low_15
Description: NF8368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8368_low_15
NF8368_low_15
[»] chr4 (7 HSPs)
chr4 (146-323)||(1390680-1390860)
chr4 (319-383)||(1359539-1359603)
chr4 (1-57)||(1390865-1390921)
chr4 (319-382)||(1390489-1390552)
chr4 (68-157)||(45645951-45646040)
chr4 (337-372)||(45645613-45645648)
chr4 (218-270)||(45645847-45645899)
[»] chr5 (8 HSPs)
chr5 (68-293)||(34666319-34666547)
chr5 (68-158)||(34646763-34646853)
chr5 (73-157)||(19648706-19648790)
chr5 (337-372)||(34646414-34646449)
chr5 (337-372)||(34666108-34666143)
chr5 (192-270)||(19648822-19648900)
chr5 (335-372)||(19649094-19649131)
chr5 (214-293)||(34646625-34646707)
[»] chr8 (8 HSPs)
chr8 (68-158)||(14192654-14192744)
chr8 (54-270)||(14201545-14201755)
chr8 (32-142)||(14183738-14183851)
chr8 (68-142)||(40718477-40718551)
chr8 (337-379)||(40718111-40718153)
chr8 (335-379)||(14183354-14183398)
chr8 (191-264)||(14183601-14183674)
chr8 (202-262)||(40718360-40718420)
[»] chr6 (2 HSPs)
chr6 (71-141)||(34303447-34303517)
chr6 (69-151)||(33888832-33888914)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 146 - 323
Target Start/End: Complemental strand, 1390860 - 1390680
Alignment:
Q  146 attcccaaagatgactttattgattcgagatgggacaagagccaaacaaacaaccccatcggcaacttgaacaaaggtgctaatagaatgcaacttaata 245  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1390860 attcccaaagatgcctttattgattcgagatgggacaagagccaaacaaacaaccccatcggcaacttgaacaaaggtgctaatagattgcaacttaata 1390761  T
Q  246 tctgcaccttgaaaatgtgcagtg---aaaggaaaatcattttcatttgatgcaaatgaataacaaaggtttaaaatacca 323  Q
    |||||||||| |||||||||||||   | ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1390760 tctgcaccttcaaaatgtgcagtgattataggaaaatcatattcatttgatgcaaatgaataacaaaggtttaaaatacca 1390680  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 1359603 - 1359539
Alignment:
Q  319 taccatttgattgcttttcaaattctactcttttgtttccaacactaaatgctttcaatgttatt 383  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  1359603 taccatttgattgcttttcaaattccactattttgtttccaacactaaatgctttcaatgttatt 1359539  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 1390921 - 1390865
Alignment:
Q  1 aatgaattactattattattattataaattcaaggagtaaagtaaacaaagtctaca 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390921 aatgaattactattattattattataaattcaaggagtaaagtaaacaaagtctaca 1390865  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 1390552 - 1390489
Alignment:
Q  319 taccatttgattgcttttcaaattctactcttttgtttccaacactaaatgctttcaatgttat 382  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  1390552 taccatttgattgctttgaaaattctactcttttgtttccaacactaaatgctttcaatgttat 1390489  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 45646040 - 45645951
Alignment:
Q  68 tttggtacaatcaataggcttaaaagacacaattttttgttgaagatcataaccaaccaacaaattttgttgagccaaattcccaaagat 157  Q
    ||||||||||||| |||| ||||| |||||  ||  ||||||||||||| |||||||||||||||||||||||||||| || ||||||||    
T  45646040 tttggtacaatcagtaggtttaaaggacactgttccttgttgaagatcacaaccaaccaacaaattttgttgagccaagttaccaaagat 45645951  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 372
Target Start/End: Complemental strand, 45645648 - 45645613
Alignment:
Q  337 caaattctactcttttgtttccaacactaaatgctt 372  Q
    ||||||||||||||||||||||||||||||||||||    
T  45645648 caaattctactcttttgtttccaacactaaatgctt 45645613  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 45645899 - 45645847
Alignment:
Q  218 aaaggtgctaatagaatgcaacttaatatctgcaccttgaaaatgtgcagtga 270  Q
    |||||| |||||||||||||||| || ||| ||||||| ||||||||| ||||    
T  45645899 aaaggtactaatagaatgcaactcaacatcagcacctttaaaatgtgcggtga 45645847  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 34666547 - 34666319
Alignment:
Q  68 tttggtacaatcaataggcttaaaagacacaattttttgttgaagatcataaccaaccaacaaattttgttgagccaaattcccaaagatg--actttat 165  Q
    ||||||||||||| |||| ||||| |||||  |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||  ||    |    
T  34666547 tttggtacaatcagtaggtttaaacgacactgttttttgttgaagatcgtaaccaaccaacaaattttgttgagccaagttcccaaagatggaaccaagt 34666448  T
Q  166 tgattcgagatgggacaagagccaaacaaacaaccccatcggcaacttgaacaaaggtgctaatagaatgcaacttaatatctgcaccttgaaaatgtgc 265  Q
    |||   |||||||    | ||| || |||||||  ||||| | || | |||||||||| |||||||||||||||| |||||| ||||||| |||||||||    
T  34666447 tga--ggagatggttggaaagcaaagcaaacaataccatcagtaattggaacaaaggtactaatagaatgcaactcaatatcggcacctttaaaatgtgc 34666350  T
Q  266 agtg---aaaggaaaatcattttcatttgat 293  Q
     |||   | ||||||||||| ||||||||||    
T  34666349 ggtgattataggaaaatcatattcatttgat 34666319  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 34646853 - 34646763
Alignment:
Q  68 tttggtacaatcaataggcttaaaagacacaattttttgttgaagatcataaccaaccaacaaattttgttgagccaaattcccaaagatg 158  Q
    ||||||||||||| |||| ||||| |||||  |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  34646853 tttggtacaatcagtaggtttaaacgacactgttttttgttgaagatcgtaaccaaccaacaaattttgttgagccaagttcccaaagatg 34646763  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 19648706 - 19648790
Alignment:
Q  73 tacaatcaataggcttaaaagacacaattttttgttgaagatcataaccaaccaacaaattttgttgagccaaattcccaaagat 157  Q
    |||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||||| || ||||||||    
T  19648706 tacaatcactaggcttaaacgacacaatattttgttgaagatcataaccaaccaacaaatttagttgtgccaagtttccaaagat 19648790  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 372
Target Start/End: Complemental strand, 34646449 - 34646414
Alignment:
Q  337 caaattctactcttttgtttccaacactaaatgctt 372  Q
    ||||||||||||||||||||||||||||||||||||    
T  34646449 caaattctactcttttgtttccaacactaaatgctt 34646414  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 372
Target Start/End: Complemental strand, 34666143 - 34666108
Alignment:
Q  337 caaattctactcttttgtttccaacactaaatgctt 372  Q
    ||||||||||||||||||||||||||||||||||||    
T  34666143 caaattctactcttttgtttccaacactaaatgctt 34666108  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 19648822 - 19648900
Alignment:
Q  192 caaacaaccccatcggcaacttgaacaaaggtgctaatagaatgcaacttaatatctgcaccttgaaaatgtgcagtga 270  Q
    ||||| || ||||| ||||| ||| ||||||| ||||| |  | |||||||||||||||||||| ||||||||||||||    
T  19648822 caaaccacaccatcagcaacatgagcaaaggtactaattgggttcaacttaatatctgcacctttaaaatgtgcagtga 19648900  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 372
Target Start/End: Original strand, 19649094 - 19649131
Alignment:
Q  335 ttcaaattctactcttttgtttccaacactaaatgctt 372  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  19649094 ttcaaattctattcttttgtttccaacactaaatgctt 19649131  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 293
Target Start/End: Complemental strand, 34646707 - 34646625
Alignment:
Q  214 gaacaaaggtgctaatagaatgcaacttaatatctgcaccttgaaaatgtgcagtg---aaaggaaaatcattttcatttgat 293  Q
    |||||||||| |||||||||||||||| || ||| ||||||| ||||||| | |||   | ||||||||||| ||||||||||    
T  34646707 gaacaaaggtactaatagaatgcaactcaacatcggcacctttaaaatgtacggtgattataggaaaatcatattcatttgat 34646625  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 14192744 - 14192654
Alignment:
Q  68 tttggtacaatcaataggcttaaaagacacaattttttgttgaagatcataaccaaccaacaaattttgttgagccaaattcccaaagatg 158  Q
    ||||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  14192744 tttggtacaatcactaggtttaaaggacacaattttttgctgaagatcataaccaaccatcaaattttgctgagccaaatttccaaagatg 14192654  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 270
Target Start/End: Complemental strand, 14201755 - 14201545
Alignment:
Q  54 tacactcaatatggtttggtacaatcaataggcttaaaagacacaattttttgttgaagatcataaccaaccaacaaattttgttgagccaaattcccaa 153  Q
    |||| ||||||||| ||||||||||||| ||||||||| |  ||| | |||||   ||||| |||||||||||||||||| ||||||||||  || ||||    
T  14201755 tacattcaatatggcttggtacaatcaacaggcttaaatgtaacagtattttgaacaagattataaccaaccaacaaattctgttgagccacgtttccaa 14201656  T
Q  154 agatgactttattgattcgagatgggacaagagccaaacaaacaaccccatcggcaacttgaacaaaggtgctaatagaatgcaacttaatatctgcacc 253  Q
    ||||| ||       || ||||||||| || |||||| ||  ||| |||||| | ||||| || |||||| |||||| ||| ||| ||||||||||||||    
T  14201655 agatggct------gtttgagatgggataaaagccaagcatgcaatcccatcagaaactttaataaaggtactaatataatacaatttaatatctgcacc 14201562  T
Q  254 ttgaaaatgtgcagtga 270  Q
    || ||||||||||||||    
T  14201561 tttaaaatgtgcagtga 14201545  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 14183851 - 14183738
Alignment:
Q  32 aaggagtaaagtaaacaaagtctaca---ctcaatatggtttggtacaatcaataggcttaaaagacacaattttttgttgaagatcataaccaaccaac 128  Q
    |||||| |||||||||||||||||||   | || ||   |||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  14183851 aaggaggaaagtaaacaaagtctacaacacccattacactttgctacaatcagtaggcttaaacgacacaattttttgttgaagatcataaccaaccaac 14183752  T
Q  129 aaattttgttgagc 142  Q
    ||||| || |||||    
T  14183751 aaattctgctgagc 14183738  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 40718551 - 40718477
Alignment:
Q  68 tttggtacaatcaataggcttaaaagacacaattttttgttgaagatcataaccaaccaacaaattttgttgagc 142  Q
    |||| |||||||| |||||||||| |||||| ||||||||| ||| |||||||||||||||||||| ||||||||    
T  40718551 tttgctacaatcagtaggcttaaatgacacagttttttgtttaaggtcataaccaaccaacaaattctgttgagc 40718477  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 40718153 - 40718111
Alignment:
Q  337 caaattctactcttttgtttccaacactaaatgctttcaatgt 379  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  40718153 caaattctattcttttgtttccaacactaaatgcttccaatgt 40718111  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 14183398 - 14183354
Alignment:
Q  335 ttcaaattctactcttttgtttccaacactaaatgctttcaatgt 379  Q
    ||||||||||| ||||||||| |||||||||||||||| ||||||    
T  14183398 ttcaaattctattcttttgttaccaacactaaatgcttccaatgt 14183354  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 14183674 - 14183601
Alignment:
Q  191 acaaacaaccccatcggcaacttgaacaaaggtgctaatagaatgcaacttaatatctgcaccttgaaaatgtg 264  Q
    ||||||||  ||||| ||||| | |||||| || ||||||| ||||||||||| ||| ||||||| ||||||||    
T  14183674 acaaacaatgccatctgcaacatcaacaaatgtactaataggatgcaacttaacatccgcacctttaaaatgtg 14183601  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 40718420 - 40718360
Alignment:
Q  202 catcggcaacttgaacaaaggtgctaatagaatgcaacttaatatctgcaccttgaaaatg 262  Q
    ||||||||||   ||||||||| ||||| | ||||||||||||||| ||||||| ||||||    
T  40718420 catcggcaacggaaacaaaggtactaatgggatgcaacttaatatccgcacctttaaaatg 40718360  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 34303517 - 34303447
Alignment:
Q  71 ggtacaatcaataggcttaaaagacacaattttttgttgaagatcataaccaaccaacaaattttgttgag 141  Q
    ||||||||| | || ||||||||||||| ||||||||||||| |||||||||||||  |||| ||||||||    
T  34303517 ggtacaatctacagacttaaaagacacagttttttgttgaaggtcataaccaaccatgaaatcttgttgag 34303447  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 33888832 - 33888914
Alignment:
Q  69 ttggtacaatcaataggcttaaaagacacaattttttgttgaagatcataaccaaccaacaaattttgttgagccaaattccc 151  Q
    ||||| |||||||||||||||||||| | ||| |||| ||| || ||||||||||| ||||| || ||||| ||||| |||||    
T  33888832 ttggtgcaatcaataggcttaaaagagataatatttttttgtaggtcataaccaactaacaagttatgttgtgccaagttccc 33888914  T

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