View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8368_low_19 (Length: 371)
Name: NF8368_low_19
Description: NF8368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8368_low_19 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 8524 - 8177
Alignment:
| Q |
18 |
atttatctcaaaatccttacacataactatacaccatatatgttggtccaaaaataatattatataccatatattaattcttttcatatctgtattaact |
117 |
Q |
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||||||||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8524 |
atttatctcaatatccatacacataactacacgccatatatgttggtccaaaaataatattatataccatatattaattcttttcatatctgtattaact |
8425 |
T |
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| Q |
118 |
agttcttttataaggtggtgatcaagagtgatcacaatacagaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaa |
217 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8424 |
agttcttttataaggtgttgatcatgagtgatcacaatacagaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaa |
8325 |
T |
|
| Q |
218 |
atacaaacatggattttctgtagctgagatggagtcactcacaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttagaaaagat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8324 |
atacaaacatggattttctgtagctgagatggagtcactcacaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttacaaaagat |
8225 |
T |
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| Q |
318 |
gatgaatcaagcaaggatgtgcagtctttcttcaacatctctgcttct |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8224 |
gatgaatcaagcaaggatgtgcagtctttcttcaacatctctgcttct |
8177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 158 - 365
Target Start/End: Original strand, 354 - 561
Alignment:
| Q |
158 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttctgtagctgagatggagtcactc |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
354 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtatgagagagaatcgcaaatacaaacatgggttttctgtggctgagatggagtcactc |
453 |
T |
|
| Q |
258 |
acaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttagaaaagatgatgaatcaagcaaggatgtgcagtctttcttcaacatct |
357 |
Q |
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||||||||||||||||| |||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
454 |
acaagcatatgtgaagtaatgttcccttcactgccaatggatgatgctctcacaaaagatgatgaatcaagcaaggatgtgcaatctttcttcaacatct |
553 |
T |
|
| Q |
358 |
ctgcttct |
365 |
Q |
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|||||||| |
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| T |
554 |
ctgcttct |
561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 31315173 - 31315520
Alignment:
| Q |
18 |
atttatctcaaaatccttacacataactatacaccatatatgttggtccaaaaataatattatataccatatattaattcttttcatatctgtattaact |
117 |
Q |
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||||||||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31315173 |
atttatctcaatatccatacacataactacacgccatatatgttggtccaaaaataatattatataccatatattaattcttttcatatctgtattaact |
31315272 |
T |
|
| Q |
118 |
agttcttttataaggtggtgatcaagagtgatcacaatacagaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaa |
217 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31315273 |
agttcttttataaggtgttgatcatgagtgatcacaatacagaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaa |
31315372 |
T |
|
| Q |
218 |
atacaaacatggattttctgtagctgagatggagtcactcacaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttagaaaagat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31315373 |
atacaaacatggattttctgtagctgagatggagtcactcacaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttacaaaagat |
31315472 |
T |
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| Q |
318 |
gatgaatcaagcaaggatgtgcagtctttcttcaacatctctgcttct |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31315473 |
gatgaatcaagcaaggatgtgcagtctttcttcaacatctctgcttct |
31315520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 158 - 365
Target Start/End: Original strand, 31330442 - 31330649
Alignment:
| Q |
158 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttctgtagctgagatggagtcactc |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
31330442 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtatgagagagaatcgcaaatacaaacatgggttttctgtggctgagatggagtcactc |
31330541 |
T |
|
| Q |
258 |
acaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttagaaaagatgatgaatcaagcaaggatgtgcagtctttcttcaacatct |
357 |
Q |
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||||||||||||||||| |||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31330542 |
acaagcatatgtgaagtaatgttcccttcactgccaatggatgatgctctcacaaaagatgatgaatcaagcaaggatgtgcaatctttcttcaacatct |
31330641 |
T |
|
| Q |
358 |
ctgcttct |
365 |
Q |
| |
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|||||||| |
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| T |
31330642 |
ctgcttct |
31330649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 31313990 - 31313944
Alignment:
| Q |
18 |
atttatctcaaaatccttacacataactatacaccatatatgttggt |
64 |
Q |
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||||||||||| |||| || |||||| |||||||||||||||||||| |
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| T |
31313990 |
atttatctcaatatccatatacataattatacaccatatatgttggt |
31313944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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