View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8368_low_26 (Length: 230)
Name: NF8368_low_26
Description: NF8368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8368_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 11729419 - 11729611
Alignment:
| Q |
19 |
catctgattcaactaactctttgatatgattttgttatctcatgacatagactgtttgaaggtagaaagtaatttttaaaattttgttgcctcatattta |
118 |
Q |
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| T |
11729419 |
catctgattcaatttactctttaatatgattttgttatctcatgacatagactgtttgaaggtagaaagtaattttaataattttgttgcctcatattta |
11729518 |
T |
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| Q |
119 |
ctttcttaattcaagtttggtttgatttacatcgagagagaggcaagcagttgcctatatattgttactttcgctgccaatgtgaatttagtg |
211 |
Q |
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| T |
11729519 |
ctttcttatttaaagtttggcttgatttacatcgagagagaggcaagcagttgcctatatattgttactttcactgccaatgtgaatttagtg |
11729611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 23739731 - 23739923
Alignment:
| Q |
19 |
catctgattcaactaactctttgatatgattttgttatctcatgacatagactgtttgaaggtagaaagtaatttttaaaattttgttgcctcatattta |
118 |
Q |
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|||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
23739731 |
catctgattcaatttactctttaatatgattttgttatctcatgacatagactgtttgaaggtagaaagtaattttaataattttgttgcctcatattta |
23739830 |
T |
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| Q |
119 |
ctttcttaattcaagtttggtttgatttacatcgagagagaggcaagcagttgcctatatattgttactttcgctgccaatgtgaatttagtg |
211 |
Q |
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|||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23739831 |
ctttcttatttaaagtttggcttgatttacatcgagagagaggcaagcagttgcctatatattgttactttcactgccaatgtgaatttagtg |
23739923 |
T |
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