View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8368_low_27 (Length: 222)
Name: NF8368_low_27
Description: NF8368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8368_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 25633075 - 25633242
Alignment:
| Q |
16 |
aagaaagaacacagaagaacaaaattaaaggttcccgaacaatcaacaaaaaattcacaccaatacgatgtgaaaatcacaaagtgaagaagaattcaat |
115 |
Q |
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| T |
25633075 |
aagaaagaacacagaagaacaaaattgaagattcccgaacaatcaacaaaaaattcacaccaatacgatgtgaaaatcacaaagtgaagaagaattcaat |
25633174 |
T |
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| Q |
116 |
caaatttcaagaagaaacaaagaatcaacgaacgatcaaagttgaattcaatcgaaccaaagacagag |
183 |
Q |
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| T |
25633175 |
caaatttcaagaagaaacaaagaatcaatgaacgatcaaagttgaattcaatcgaaccaaagacagag |
25633242 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 11922389 - 11922345
Alignment:
| Q |
66 |
aaattcacaccaatacgatgtgaaaatcacaaag-tgaagaagaa |
109 |
Q |
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||||||||||||||| |||| ||||||||||||| |||||||||| |
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| T |
11922389 |
aaattcacaccaatatgatgcgaaaatcacaaagatgaagaagaa |
11922345 |
T |
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