View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8368_low_7 (Length: 561)
Name: NF8368_low_7
Description: NF8368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8368_low_7 |
 | |
|
| [»] scaffold1487 (2 HSPs) |
| | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0045 (2 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0510 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 54301052 - 54300771
Alignment:
| Q |
16 |
atgaatgaagttagctcgcgccttttataccatgcctattctgattgaactcgccatggcaagtaatctactcgcctcgcgagttgagctttctttccca |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
54301052 |
atgagtgaagttagctcgcgccttttataccatgcttgttctgattgaactcgccatggcaagtaatatgctcgcctcgcgagttgagctttctttccca |
54300953 |
T |
|
| Q |
116 |
gtgagtttctgccacgtcagctttgaaggattaggccgccttaactcgcctcgcgagtaattttgctcatcatggcaagttagctcgccttcaacttgcc |
215 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54300952 |
atgggtttctgccacgtcagctttgaaggattaggccgccttaactcgcctcgcgagtaatttttctcatcatggcaagttagctcgccttcaacttgcc |
54300853 |
T |
|
| Q |
216 |
atggcgagtaaataggtcttcctgcctctactcgcttttcagcactcgccgttgcgagttggaggcgagtgaattgatgctt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54300852 |
atggcgagtaaataggtcttcctgcctctactcgcttttcagcactcgccgttgcaagttggaggcgagtgaattgatgctt |
54300771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 334 - 543
Target Start/End: Complemental strand, 54300731 - 54300520
Alignment:
| Q |
334 |
agtgtcttgaggtcaattcctgcacaaaggggtatagtaagatata--aagcgtaatagggcaattgtccatctttttctcagcttttccctaaataact |
431 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54300731 |
agtgtcttgaggtcaattcctacacaaaagggtatagtaagatatataaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataact |
54300632 |
T |
|
| Q |
432 |
tgtaagataagtaacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatcagcgcgctatctaaggtactggcagaaggatcacct |
531 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54300631 |
tgtaagacaagtaacaaaagtgccttaattgtaacatggaattaactactttctggcacttatcagcgtgctatctaaggtactggcagaaggatcacct |
54300532 |
T |
|
| Q |
532 |
cgctcaatccta |
543 |
Q |
| |
|
||||||||||| |
|
|
| T |
54300531 |
ggctcaatccta |
54300520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 40976073 - 40975903
Alignment:
| Q |
35 |
gccttttataccatgcctattctgattgaactcgccatggcaagtaatctactcgcc-tcgcgagttgagctttctttcccagtgagtttctgccacgtc |
133 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||| | |||||| | | ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40976073 |
gccttttatactatgcctgttctgattgaactcgccatggcaagtaatttgctcgccatggtgagttgagctttctttcccagtggatttctgccacgtc |
40975974 |
T |
|
| Q |
134 |
agctttgaaggattaggccgccttaactcgcctcgcgagtaattttgctcatcatggcaagttagctcgcc |
204 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
40975973 |
agctttaagggattaggccgccttaactcgcctcgcgagtaattttactcgccatggcaagttagctcgcc |
40975903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 334 - 496
Target Start/End: Complemental strand, 40975752 - 40975587
Alignment:
| Q |
334 |
agtgtcttgaggt-caattcctgcacaaaggggtatagtaagatataaa--gcgtaatagggcaattgtccatctttttctcagcttttccctaaataac |
430 |
Q |
| |
|
|||||||||| || ||||||||||||||| || || ||||||||||||| | |||||| | |||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
40975752 |
agtgtcttgacgttcaattcctgcacaaatggatagagtaagatataaaaagtgtaataagaaaattgttcatctttttcttggattttccctaaataac |
40975653 |
T |
|
| Q |
431 |
ttgtaagataagtaacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatca |
496 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
40975652 |
ttgtaagacaagtaacaaaagtgctttaattgtaacatgtaattaactactttctggcacttatca |
40975587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 335 - 496
Target Start/End: Original strand, 13570516 - 13570677
Alignment:
| Q |
335 |
gtgtcttgaggtcaattcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataactt |
432 |
Q |
| |
|
||||||| || ||||||| |||||||| ||||| |||||| || ||||||||||||||||||| || ||||||||||| |||||| |||||||||||| |
|
|
| T |
13570516 |
gtgtcttaagttcaattc-tgcacaaatgggtagagtaaggtaaataaagcgtaatagggcaataatc-atctttttctcggctttttcctaaataactt |
13570613 |
T |
|
| Q |
433 |
gtaagataagtaacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatca |
496 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
13570614 |
gtaagacaagtaacaaaagtgccttaaatgtaacatgaaattaactactttctggaacttatca |
13570677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 346 - 496
Target Start/End: Complemental strand, 52182289 - 52182138
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagatataaa--gcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagt |
443 |
Q |
| |
|
||||||| ||| |||| || || ||||||||||||| |||||||||||||||| | || ||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
52182289 |
tcaattcatgcgcaaatggatagagtaagatataaaaagcgtaatagggcaattattca-ctttttctcgacttttccctaaataacttgtaagacaagt |
52182191 |
T |
|
| Q |
444 |
aacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatca |
496 |
Q |
| |
|
|||||||||| ||||| ||||| || ||||||| ||||||||||||||||| |
|
|
| T |
52182190 |
aacaaaagtgccttaaatgtaaagtgatattaactactttctggcacttatca |
52182138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 335 - 499
Target Start/End: Complemental strand, 23542637 - 23542472
Alignment:
| Q |
335 |
gtgtcttgaggtcaattcctgcacaaaggggtatagtaagatata--aagcgtaatagggcaattgtccatctttttctcagcttttccctaaataactt |
432 |
Q |
| |
|
|||||||||| ||||||| |||||||| | || ||||||||| | |||||||||||||||||| || | ||| |||| ||||||||||| ||||||| |
|
|
| T |
23542637 |
gtgtcttgagttcaattcttgcacaaattgatagagtaagataaagaaagcgtaatagggcaattatcact-tttctctcggcttttccctagataactt |
23542539 |
T |
|
| Q |
433 |
gtaagataagtaacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatcagcg |
499 |
Q |
| |
|
|| | | |||||||| ||||||||||| || ||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
23542538 |
gtgaaacaagtaacagaagtgtcttaaatgaaacatggaattaactactttctcgcacttatcagcg |
23542472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 346 - 475
Target Start/End: Complemental strand, 49358727 - 49358596
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagatataaa--gcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagt |
443 |
Q |
| |
|
||||||||| |||||| || || ||||||||||||| |||||||||| ||||| | || ||| ||| |||||| |||||||||||||||||| || | |
|
|
| T |
49358727 |
tcaattcctacacaaatggatagagtaagatataaaaagcgtaataggacaattattcacttttctcttggctttttcctaaataacttgtaagacaaat |
49358628 |
T |
|
| Q |
444 |
aacaaaagtgtcttaattgtaacatggaatta |
475 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||| |
|
|
| T |
49358627 |
aacaaaagtgccttaaatgtaacattgaatta |
49358596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 42852743 - 42852656
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtcagctttga-aggattaggccgccttaactcgcctcgcgagtaattttg |
180 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||| | | ||||||||||||| |||||||| |||||| ||||| |
|
|
| T |
42852743 |
gcgagttgagctttctttccatatgggtttctgccacgtcagctttgagaaggttaggccgccttagctcgcctcacgagtagttttg |
42852656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 455
Target Start/End: Complemental strand, 666686 - 666576
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagat--ataaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagt |
443 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||||||||||||| |||| | || ||| |||| |||||||||| |||||||||| | |||||| |
|
|
| T |
666686 |
tcaattcctgcacaaatgggtagagtaagatgaataaagcgtaataggtcaataat-cacttttctctcggcttttccctgaataacttgtgaaataagt |
666588 |
T |
|
| Q |
444 |
aacaaaagtgtc |
455 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
666587 |
aacaaacgtgtc |
666576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 453
Target Start/End: Complemental strand, 37355444 - 37355326
Alignment:
| Q |
336 |
tgtcttgaggtcaattcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttg |
433 |
Q |
| |
|
||||||||| |||| ||||||||||| |||| ||||||||| |||||||||| |||||||| || | | |||||| |||||||||| ||||||||| |
|
|
| T |
37355444 |
tgtcttgagttcaaatcctgcacaaatgggtgaagtaagatagataaagcgtaaaagggcaataatcact-tatttctcggcttttccctcaataacttg |
37355346 |
T |
|
| Q |
434 |
taagataagtaacaaaagtg |
453 |
Q |
| |
|
||| | |||||||||||||| |
|
|
| T |
37355345 |
taaaacaagtaacaaaagtg |
37355326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 453
Target Start/End: Complemental strand, 37367418 - 37367300
Alignment:
| Q |
336 |
tgtcttgaggtcaattcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttg |
433 |
Q |
| |
|
||||||||| |||| ||||||||||| |||| ||||||||| |||||||||| |||||||| || | | |||||| |||||||||| ||||||||| |
|
|
| T |
37367418 |
tgtcttgagttcaaatcctgcacaaatgggtgaagtaagatagataaagcgtaaaagggcaataatcact-tatttctcggcttttccctcaataacttg |
37367320 |
T |
|
| Q |
434 |
taagataagtaacaaaagtg |
453 |
Q |
| |
|
||| | |||||||||||||| |
|
|
| T |
37367319 |
taaaacaagtaacaaaagtg |
37367300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 453
Target Start/End: Complemental strand, 36753862 - 36753744
Alignment:
| Q |
336 |
tgtcttgaggtcaattcctgcacaaaggggtatagtaagat--ataaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttg |
433 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| | || | | |||| |||||||||| ||||||||| |
|
|
| T |
36753862 |
tgtcttgagttcaaatcctgcacaaatgggtaaagtaagatagataaagcgtaaaagggcaataat-cacttatctctcggcttttccctcaataacttg |
36753764 |
T |
|
| Q |
434 |
taagataagtaacaaaagtg |
453 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
36753763 |
caaaacaagtaacaaaagtg |
36753744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 453
Target Start/End: Original strand, 41374112 - 41374230
Alignment:
| Q |
336 |
tgtcttgaggtcaattcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttg |
433 |
Q |
| |
|
||||||||| || | ||||||||||| |||| ||||||||| |||||||||| |||||||| || | | ||||||||||||||||| ||||||||| |
|
|
| T |
41374112 |
tgtcttgagttcgaatcctgcacaaatgggtgaagtaagatagataaagcgtaaaagggcaataatcact-tatttctcagcttttcccttaataacttg |
41374210 |
T |
|
| Q |
434 |
taagataagtaacaaaagtg |
453 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
41374211 |
caaaacaagtaacaaaagtg |
41374230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 36754047 - 36754019
Alignment:
| Q |
216 |
atggcgagtaaataggtcttcctgcctct |
244 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36754047 |
atggcgagtaaataggtcttcctgcctct |
36754019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 35 - 220
Target Start/End: Original strand, 9316718 - 9316903
Alignment:
| Q |
35 |
gccttttataccatgcctattctgattgaactcgccatggcaagtaatctactcgcctcgcgagttgagctttctttcccagtgagtttctgccacgtca |
134 |
Q |
| |
|
|||||||| || ||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9316718 |
gccttttaaactatgtctgttctgattgaactcgccatggcaagtaatctgctcgcctcgcgagttgagctttctttcccagtgggtttctgccacgtca |
9316817 |
T |
|
| Q |
135 |
gctttgaaggattaggccgccttaactcgcctcgcgagtaattttgctcatcatggcaagttagctcgccttcaacttgccatggc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |
|
|
| T |
9316818 |
gctttgaaggattaggccgccttaactcgcctcgcgagtaattttgctcgccatggcaagttagctcgccttgaactcaccatggc |
9316903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 346 - 497
Target Start/End: Original strand, 9317041 - 9317194
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagatataaa--gcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagt |
443 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||| || || |||||||||||| |||||||||||| ||||||||||| |||||||||||| |||| |
|
|
| T |
9317041 |
tcaattcctgcacaaatggatagagtaagatataaaaagcatagtagggcaattgttcatctttttctcgacttttccctaactaacttgtaagacaagt |
9317140 |
T |
|
| Q |
444 |
aacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatcag |
497 |
Q |
| |
|
||||||| || ||||| ||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
9317141 |
aacaaaactgccttaaatgtaacatgaaattaactactttctggcacttatcag |
9317194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 346 - 496
Target Start/End: Original strand, 21818594 - 21818745
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagatat---aaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataag |
442 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| ||||||||||||||||||| | || ||| |||| ||||||||||||||||||||| | | ||| |
|
|
| T |
21818594 |
tcaattcctgcacaaatgggtagagtaagatataaaaaagcgtaatagggcaattat-cacttttctctcggcttttccctaaataacttgtgaaacaag |
21818692 |
T |
|
| Q |
443 |
taacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatca |
496 |
Q |
| |
|
||||||| ||| | ||| | ||||| |||| |||| |||| |||||||||||| |
|
|
| T |
21818693 |
taacaaatgtgacgtaaat-aaacattgaataaactactttttggcacttatca |
21818745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 23252382 - 23252447
Alignment:
| Q |
232 |
tcttcctgcctctactcgcttttcagcactcgccgttgcgagttggaggcgagtgaattgatgctt |
297 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
23252382 |
tctttctgcctctgctcgcttttcagcactcgccactgcgagttgaaggcgagtgaattgatgctt |
23252447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 11912400 - 11912321
Alignment:
| Q |
219 |
gcgagtaaataggtcttcctgcctcta-ctcgcttttcagcactcgccgttgcgagttggaggcgagtgaattgatgctt |
297 |
Q |
| |
|
|||||| ||| ||||||| ||||||| ||||| |||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
11912400 |
gcgagtgaattggtcttcatgcctcttgctcgcctttcagcactcgccattgcgagttgaaggcgagtgaattgatgctt |
11912321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 453
Target Start/End: Complemental strand, 11912280 - 11912160
Alignment:
| Q |
334 |
agtgtcttgaggtcaattcctgcacaaaggggtatagtaaga--tataaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataact |
431 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||||||||||||| || | | |||| |||||||||| ||||||| |
|
|
| T |
11912280 |
agtgtcttgaggttaattcctgcataaaagggtagagtaagatatataaagcgtaatagggcaatt-aacacttatctctcggcttttccctcaataact |
11912182 |
T |
|
| Q |
432 |
tgtaagataagtaacaaaagtg |
453 |
Q |
| |
|
|| || | |||||||||||||| |
|
|
| T |
11912181 |
tgcaaaacaagtaacaaaagtg |
11912160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 334 - 397
Target Start/End: Original strand, 44917554 - 44917619
Alignment:
| Q |
334 |
agtgtcttgaggtcaattcctgcacaaaggggtatagtaag--atataaagcgtaatagggcaatt |
397 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
44917554 |
agtgtcttgaggctaattcctgcacaaaagggtagagtaagatatataaagcgtaatagggcaatt |
44917619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 397
Target Start/End: Original strand, 23252492 - 23252557
Alignment:
| Q |
334 |
agtgtcttgaggtcaattcctgcacaaaggggtatagtaag--atataaagcgtaatagggcaatt |
397 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||| |||||| |||||||| |||||||||||||| |
|
|
| T |
23252492 |
agtgtcttgaggttaattcctgcataaaagggtagagtaagatatataaagtgtaatagggcaatt |
23252557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 349 - 455
Target Start/End: Complemental strand, 2823820 - 2823713
Alignment:
| Q |
349 |
attcctgcacaaaggggtatagtaagat--ataaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagtaac |
446 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||| ||| ||| | ||| |||| ||||||||||| ||| ||||||| | ||||||| |
|
|
| T |
2823820 |
attcctgcacaaatgggtatagtaagatgattaaagcgtaataggtcaaaattccct-tttctctcggcttttccctagatagcttgtaaaacaagtaac |
2823722 |
T |
|
| Q |
447 |
aaaagtgtc |
455 |
Q |
| |
|
||| ||||| |
|
|
| T |
2823721 |
aaatgtgtc |
2823713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 453
Target Start/End: Complemental strand, 23761470 - 23761352
Alignment:
| Q |
336 |
tgtcttgaggtcaattcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttg |
433 |
Q |
| |
|
||||||||| |||| |||||| |||| || | ||||||||| |||||||||| |||||||| || || | | ||||||||||||||| ||||||||| |
|
|
| T |
23761470 |
tgtcttgagttcaaatcctgctcaaatggatgaagtaagataaataaagcgtaaaagggcaataatc-atttatctctcagcttttccctcaataacttg |
23761372 |
T |
|
| Q |
434 |
taagataagtaacaaaagtg |
453 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
23761371 |
caaaacaagtaacaaaagtg |
23761352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 38671605 - 38671557
Alignment:
| Q |
86 |
ctcgcctcgcgagttgagctttctttcccagtgagtttctgccacgtca |
134 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
38671605 |
ctcgcctggcgacttgagctttctttgccagtgggtttctgccacgtca |
38671557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 44917453 - 44917513
Alignment:
| Q |
237 |
ctgcctctactcgcttttcagcactcgccgttgcgagttggaggcgagtgaattgatgctt |
297 |
Q |
| |
|
|||||||| || |||||| |||||||||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
44917453 |
ctgcctctgctagcttttaagcactcgccactgcgagttagagacgagtgaattgatgctt |
44917513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 1175781 - 1175825
Alignment:
| Q |
409 |
tctcagcttttccctaaataacttgtaagataagtaacaaaagtg |
453 |
Q |
| |
|
||||||||||||||| ||||||||| || | |||||||||||||| |
|
|
| T |
1175781 |
tctcagcttttcccttaataacttgcaaaacaagtaacaaaagtg |
1175825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 13432684 - 13432716
Alignment:
| Q |
102 |
agctttctttcccagtgagtttctgccacgtca |
134 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
13432684 |
agctttctttgccagtgagtttctgccacgtca |
13432716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 35 - 220
Target Start/End: Original strand, 18766469 - 18766654
Alignment:
| Q |
35 |
gccttttataccatgcctattctgattgaactcgccatggcaagtaatctactcgcctcgcgagttgagctttctttcccagtgagtttctgccacgtca |
134 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
18766469 |
gccttttatactatgcctgttctgattgaactagccatggcaagtaatctgctcgcctcgtgagttgagctttcttttctagtgggtttctgccacgtca |
18766568 |
T |
|
| Q |
135 |
gctttgaaggattaggccgccttaactcgcctcgcgagtaattttgctcatcatggcaagttagctcgccttcaacttgccatggc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
18766569 |
gctttgaaggattaggccgccttaactcgcctcgcgagtaattttgctcgccatggcacgttagctcgccttgaactcgccatggc |
18766654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 346 - 476
Target Start/End: Original strand, 18766792 - 18766924
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagatataaa--gcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagt |
443 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||| || ||||||||||||||| |||||||||||| ||||||||||| |||||||||||| |||| |
|
|
| T |
18766792 |
tcaattcctgcacaaatggatagagtaagatataaaaagcataatagggcaattgttcatctttttctcgacttttccctaactaacttgtaagacaagt |
18766891 |
T |
|
| Q |
444 |
aacaaaagtgtcttaattgtaacatggaattaa |
476 |
Q |
| |
|
|||||||||| ||||| ||||||||| |||||| |
|
|
| T |
18766892 |
aacaaaagtgccttaaatgtaacatgaaattaa |
18766924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 14121888 - 14121799
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtcagctttgaag-gattaggccgccttaactcgcctcgcgagtaattttgctc |
183 |
Q |
| |
|
|||||| |||||||||| ||| || ||||||||||||||||||| |||| | ||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
14121888 |
gcgagtcgagctttcttcccctatgggtttctgccacgtcagctt-gaagaggttaggccgccttagctcgcctcgcgagtagttttgctc |
14121799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 14115738 - 14115649
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtcagctttgaag-gattaggccgccttaactcgcctcgcgagtaattttgctc |
183 |
Q |
| |
|
||||||||||||||| | ||| | ||||||||||||||||||| |||| | ||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
14115738 |
gcgagttgagctttcatcccctataggtttctgccacgtcagctt-gaagaggttaggccgccttagctcgcctcgcgagtagttttgctc |
14115649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 9847654 - 9847742
Alignment:
| Q |
348 |
aattcctgcacaaaggggtatagtaagatata--aagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgt |
434 |
Q |
| |
|
||||||| |||||| || || ||||||||||| ||| |||||||||||||| | || ||| |||| ||||||||||||||||||||| |
|
|
| T |
9847654 |
aattcctccacaaatggataaagtaagatatataaagtgtaatagggcaattattcacttttatctcggcttttccctaaataacttgt |
9847742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 10080985 - 10080938
Alignment:
| Q |
87 |
tcgcctcgcgagttgagctttctttcccagtgagtttctgccacgtca |
134 |
Q |
| |
|
|||||| |||| ||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
10080985 |
tcgcctggcgacttgagctttctttgccagtgggtttctgccacgtca |
10080938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 32327791 - 32327718
Alignment:
| Q |
151 |
ccgccttaactcgcctcgcgagtaattttgctcatcatggcaagttagctcgccttcaacttgccatggcgagt |
224 |
Q |
| |
|
||||||| ||||||||||||||| ||| | ||| |||||| ||| ||||||||||| ||| ||||| |||||| |
|
|
| T |
32327791 |
ccgccttcactcgcctcgcgagtcattctactcgccatggcgagtaagctcgccttccactcgccattgcgagt |
32327718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 1166500 - 1166445
Alignment:
| Q |
334 |
agtgtcttgaggtcaattcctgcacaaaggggtatagtaagat--ataaagcgtaa |
387 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||| |||||||| ||||||||||| |
|
|
| T |
1166500 |
agtgtcttgagttcaattcctgcataaatgggtaaagtaagatagataaagcgtaa |
1166445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 456
Target Start/End: Original strand, 22871443 - 22871553
Alignment:
| Q |
347 |
caattcctgcacaaaggggtatagtaagatat--aaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagta |
444 |
Q |
| |
|
|||||| |||||||| ||||| |||||| || ||||| |||||||||| |||| | | |||||| |||||||| | | ||||||||||| | ||||| |
|
|
| T |
22871443 |
caattcatgcacaaatgggtagagtaaggtagtaaaagcataatagggcatttgttta-cattttcttagcttttctcgagataacttgtaaaacaagta |
22871541 |
T |
|
| Q |
445 |
acaaaagtgtct |
456 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22871542 |
acaaaagtgtct |
22871553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 2e-60; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 54 - 220
Target Start/End: Original strand, 43365048 - 43365214
Alignment:
| Q |
54 |
ttctgattgaactcgccatggcaagtaatctactcgcctcgcgagttgagctttctttcccagtgagtttctgccacgtcagctttgaaggattaggccg |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
43365048 |
ttctgattgaactcgccatggcaagtaatctgctcgcctcgcgagttgagctttctttcccagtggatttctgccacgtcagttttgaaggattaggccg |
43365147 |
T |
|
| Q |
154 |
ccttaactcgcctcgcgagtaattttgctcatcatggcaagttagctcgccttcaacttgccatggc |
220 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||| || || |||| |||||||| |
|
|
| T |
43365148 |
tcttaactcgcctggcgagtaattttgctcgccatggcaagttagcttgctttgaactcgccatggc |
43365214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 346 - 496
Target Start/End: Original strand, 43365372 - 43365524
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagatataaa--gcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagt |
443 |
Q |
| |
|
|||||||||||||||| || || |||||||| |||| |||||||||||||||||| |||||||||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
43365372 |
tcaattcctgcacaaatggatagagtaagatgtaaaaagcgtaatagggcaattgttcatctttttctcggtttttccctaactaacttgtaagataagt |
43365471 |
T |
|
| Q |
444 |
aacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatca |
496 |
Q |
| |
|
|||||||||| ||||| ||| ||||| |||||||| |||||| ||| |||||| |
|
|
| T |
43365472 |
aacaaaagtgccttaaatgtcacatgaaattaactactttctagcatttatca |
43365524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 335 - 496
Target Start/End: Original strand, 9704249 - 9704410
Alignment:
| Q |
335 |
gtgtcttgaggtcaattcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataactt |
432 |
Q |
| |
|
||||||| || ||||||| |||||||| ||||| |||||| || ||||||||||||||||||| || ||||||||||| |||||| |||||||||||| |
|
|
| T |
9704249 |
gtgtcttaagttcaattc-tgcacaaatgggtagagtaaggtaaataaagcgtaatagggcaataatc-atctttttctcggctttttcctaaataactt |
9704346 |
T |
|
| Q |
433 |
gtaagataagtaacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatca |
496 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
9704347 |
gtaagacaagtaacaaaagtgccttaaatgtaacatgaaattaactactttctggaacttatca |
9704410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 28443299 - 28443388
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtcagctttgaag-gattaggccgccttaactcgcctcgcgagtaattttgctc |
183 |
Q |
| |
|
||||||||||||||| | ||| | ||||||||||||||||||| |||| | ||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
28443299 |
gcgagttgagctttcatcccctataggtttctgccacgtcagctt-gaagaggttaggccgccttagctcgcctcgcgagtagttttgctc |
28443388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 48456473 - 48456577
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagat--ataaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagt |
443 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||||||||||||| |||| | || ||| |||| |||||| ||| |||||||||| | | |||| |
|
|
| T |
48456473 |
tcaattcctgcacaaatgggtagagtaagatgaataaagcgtaataggtcaataat-cacttttctctcggctttttcctgaataacttgtgaaacaagt |
48456571 |
T |
|
| Q |
444 |
aacaaa |
449 |
Q |
| |
|
|||||| |
|
|
| T |
48456572 |
aacaaa |
48456577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 10830523 - 10830483
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtca |
134 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
10830523 |
gcgacttgagctttctttgccagtgggtttctgccacgtca |
10830483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 11024315 - 11024275
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtca |
134 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
11024315 |
gcgacttgagctttctttgccagtgggtttctgccacgtca |
11024275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 9334581 - 9334427
Alignment:
| Q |
66 |
tcgccatggcaagtaatctactcgcctcgcgagttgagctttctttcccagtgagtttctgccacgtcagctttgaaggattaggccgccttaactcgcc |
165 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9334581 |
tcgccatggcaggtaatttgctcgcctcgcgagttgagctttctttcccagtgggtttctgccacgtcagttttgaaggattaggccgccttaactcgcc |
9334482 |
T |
|
| Q |
166 |
tcgcgagtaattttgctcatcatggcaagttagctcgccttcaacttgccatggc |
220 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||| |||||||| |
|
|
| T |
9334481 |
tcgcgagtaattttgctcgccatggcaagttagctcgccttgaactcgccatggc |
9334427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 346 - 496
Target Start/End: Complemental strand, 9334289 - 9334137
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagatataaa--gcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagt |
443 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||| |||||||||||| |||| |
|
|
| T |
9334289 |
tcaattcctgcacaaatggatagagtaagatataaaaagcgtaatagggcaatttttcatctttttctcgccttttccctaactaacttgtaagacaagt |
9334190 |
T |
|
| Q |
444 |
aacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatca |
496 |
Q |
| |
|
|||||| ||| ||||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
9334189 |
aacaaatgtgccttaaatgtaacatgatattaactactttctggcacttatca |
9334137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 12504978 - 12504901
Alignment:
| Q |
218 |
ggcgagtaaataggtcttcctgcctctactcgctttt-cagcactcgccgttgcgagttggaggcgagtgaattgatg |
294 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| | || ||||||||||||| |||| |||||||||||||||| |
|
|
| T |
12504978 |
ggcgagtaaataggtcttcctgcctctgctcgcttttgctgctctcgccgttgcgaattggtggcgagtgaattgatg |
12504901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 499
Target Start/End: Original strand, 20900438 - 20900591
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagatat--aaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagt |
443 |
Q |
| |
|
||||||||| |||||| ||||| |||||||||| ||||||||||||||||||| | || ||| |||| ||||||||||| ||||||||| | | |||| |
|
|
| T |
20900438 |
tcaattcctacacaaatgggtagagtaagatataaaaagcgtaatagggcaattat-cacttttctctcggcttttccctacataacttgtgaaacaagt |
20900536 |
T |
|
| Q |
444 |
aacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatcagcg |
499 |
Q |
| |
|
|||||| || | ||| | ||||| ||||||||| |||| ||||||||||||||| |
|
|
| T |
20900537 |
aacaaacgtaccataaat-aaacattgaattaactactttttggcacttatcagcg |
20900591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 12505039 - 12504972
Alignment:
| Q |
217 |
tggcgagtaaataggtcttcctgcctctactcgcttttcagc-actcgccgttgcgagttggaggcgagt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| || ||||| | ||||||||||||||||||| |
|
|
| T |
12505039 |
tggcgagtaaataggtcttcctgcctctgctcgctttt--gctactcgtcattgcgagttggaggcgagt |
12504972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 30579586 - 30579505
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtcagctttgaag-gattaggccgccttaactcgcctcgcgagta |
174 |
Q |
| |
|
||||||||| |||||| |||||| |||||||||||||||||| ||| | | || |||||||||||||||||||||||||| |
|
|
| T |
30579586 |
gcgagttgatgtttcttcaccagtgggtttctgccacgtcagctctgaggagttttggccgccttaactcgcctcgcgagta |
30579505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 37336431 - 37336511
Alignment:
| Q |
416 |
ttttccctaaataacttgtaagataagtaacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatca |
496 |
Q |
| |
|
|||||| |||||||||||||| | |||||||||||||| ||||| | ||||||| | |||||| |||||| ||||||||| |
|
|
| T |
37336431 |
ttttccttaaataacttgtaaaacaagtaacaaaagtgccttaaatataacatgaatttaactactttctaacacttatca |
37336511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 449
Target Start/End: Original strand, 9844491 - 9844592
Alignment:
| Q |
349 |
attcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagtaac |
446 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||||||| ||| ||||| ||| |||| ||||||||||| ||||||||||| | ||||||| |
|
|
| T |
9844491 |
attcctgcacaaatgggtagagtaagatgactaaagcgtaataggtcaaaattccat-tttctctcggcttttccctagataacttgtaaaacaagtaac |
9844589 |
T |
|
| Q |
447 |
aaa |
449 |
Q |
| |
|
||| |
|
|
| T |
9844590 |
aaa |
9844592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 434
Target Start/End: Complemental strand, 30579281 - 30579191
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgt |
434 |
Q |
| |
|
|||||||||||||||| | || ||||||||| |||| ||||||||||||||| | || ||| |||| ||||||||||||||||||||| |
|
|
| T |
30579281 |
tcaattcctgcacaaatgaataaagtaagatacataaaacgtaatagggcaattattcacttttctctcggcttttccctaaataacttgt |
30579191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 12504859 - 12504802
Alignment:
| Q |
334 |
agtgtcttgaggtcaattcctgcacaaaggggtatagtaaga--tataaagcgtaata |
389 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
12504859 |
agtgtcttgaggtcaattcatgcacaaaagggtagagtaagatatataaagcgtaata |
12504802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 349 - 455
Target Start/End: Complemental strand, 2153201 - 2153094
Alignment:
| Q |
349 |
attcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagtaac |
446 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||||||| ||| ||| | ||| |||| ||||||||||| ||||||||||| | ||||||| |
|
|
| T |
2153201 |
attcctgcacaaatgggtagagtaagatgactaaagcgtaataggtcaaaattccct-tttctctcggcttttccctagataacttgtaaaacaagtaac |
2153103 |
T |
|
| Q |
447 |
aaaagtgtc |
455 |
Q |
| |
|
||| ||||| |
|
|
| T |
2153102 |
aaacgtgtc |
2153094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 6e-60; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 27901318 - 27901499
Alignment:
| Q |
38 |
ttttataccatgcctattctgattgaactcgccatggcaagtaatctactcgcctcgcgagttgagctttctttcccagtgagtttctgccacgtcagct |
137 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
27901318 |
ttttatactatgcatgttctgattgaactcgccatggcaagtaatctgctcgcctcacgagttgagctttctttcctagtgggtttctgccacgtcagct |
27901417 |
T |
|
| Q |
138 |
ttgaaggattaggccgccttaactcgcctcgcgagtaattttgctcatcatggcaagttagctcgccttcaacttgccatgg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| || ||| || |||| ||||||| |
|
|
| T |
27901418 |
ttgaaggattaggccgccttaactcgcctcgcgcgtaattttgctcgccatggtaagtttgcccgctttgaactcgccatgg |
27901499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 346 - 496
Target Start/End: Original strand, 27902089 - 27902241
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagatataaa--gcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagt |
443 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||| | |||||||||| |||| |
|
|
| T |
27902089 |
tcaattcctgcacaaatggatagagtaagatataaaaagcgtaatagcgcaattgttcatctttttctcggcttttccctaacttacttgtaagacaagt |
27902188 |
T |
|
| Q |
444 |
aacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatca |
496 |
Q |
| |
|
|||||||||| ||||| ||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
27902189 |
aacaaaagtgccttaaatgtaacatgaaattaactactttctggcacttatca |
27902241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 453
Target Start/End: Complemental strand, 20650015 - 20649895
Alignment:
| Q |
334 |
agtgtcttgaggtcaattcctgcacaaaggggtatagtaagat--ataaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataact |
431 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||| |||||||| ||||||||||| |||||||| | || | | ||||||||||||||| ||||||| |
|
|
| T |
20650015 |
agtgtcttgagttcaattcttgcacaaatgggtaaagtaagatagataaagcgtaaaagggcaataat-cacttatctctcagcttttccctcaataact |
20649917 |
T |
|
| Q |
432 |
tgtaagataagtaacaaaagtg |
453 |
Q |
| |
|
||||| | |||||||||||||| |
|
|
| T |
20649916 |
tgtaaaacaagtaacaaaagtg |
20649895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 453
Target Start/End: Original strand, 6037396 - 6037514
Alignment:
| Q |
336 |
tgtcttgaggtcaattcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttg |
433 |
Q |
| |
|
||||||||| |||| ||||||||||| |||| ||||||||| |||||||||| |||||||| || | | ||||||||||||||||| ||||||||| |
|
|
| T |
6037396 |
tgtcttgagttcaaatcctgcacaaatgggtgaagtaagatagataaagcgtaaaagggcaataatcact-tatttctcagcttttcccttaataacttg |
6037494 |
T |
|
| Q |
434 |
taagataagtaacaaaagtg |
453 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
6037495 |
caaaacaagtaacaaaagtg |
6037514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 18867636 - 18867723
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtcagctttgaag-gattaggccgccttaactcgcctcgcgagtaattttg |
180 |
Q |
| |
|
|||||||| |||||||| ||| || ||||||||||||||| |||||| | | ||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
18867636 |
gcgagttgtgctttcttcccctatgggtttctgccacgtcaactttgaggaggttaggccgccttagctcgcctcgcgagtagttttg |
18867723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 4675785 - 4675874
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtcagctttgaag-gattaggccgccttaactcgcctcgcgagtaattttgctc |
183 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||||||||||| |||| | ||||||||||||| |||||||| |||||| |||||||| |
|
|
| T |
4675785 |
gcgagttgagctttcttcccctataggtttctgccacgtcagctt-gaagaggttaggccgccttagctcgcctcacgagtagttttgctc |
4675874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 449
Target Start/End: Original strand, 4591926 - 4592027
Alignment:
| Q |
349 |
attcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagtaac |
446 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||||||| ||| ||||| ||| |||| ||||||||||| ||||||||||| | ||||||| |
|
|
| T |
4591926 |
attcctgcacaaatgggtagagtaagatgactaaagcgtaataggtcaaaattccat-tttctctcggcttttccctagataacttgtaaaacaagtaac |
4592024 |
T |
|
| Q |
447 |
aaa |
449 |
Q |
| |
|
||| |
|
|
| T |
4592025 |
aaa |
4592027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 9576390 - 9576257
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtcagc-tttgaaggattaggccgccttaactcgcctcgcgagtaattttgctcatcatggca |
192 |
Q |
| |
|
||||||||| |||||| |||| || |||| |||||||||||| ||||| | || ||||||| ||||||||||||||| ||| ||| |||||| |
|
|
| T |
9576390 |
gcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttgagaggctaaaccgccttcactcgcctcgcgagtcattccactcgccatggcg |
9576291 |
T |
|
| Q |
193 |
agttagctcgccttcaacttgccatggcgagtaa |
226 |
Q |
| |
|
||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
9576290 |
agtaagctcgccttccactcgccatggcgagtaa |
9576257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 335 - 453
Target Start/End: Original strand, 47442102 - 47442221
Alignment:
| Q |
335 |
gtgtcttgaggtcaattcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataactt |
432 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||| ||||||||||| |||||||||| |||| ||| | || | | |||| |||||||||| |||||||| |
|
|
| T |
47442102 |
gtgtcttgagttcaaatcctgcacaaatgggcatagtaagatatctaaagcgtaaaagggtaataat-cacttatctctcggcttttccctcaataactt |
47442200 |
T |
|
| Q |
433 |
gtaagataagtaacaaaagtg |
453 |
Q |
| |
|
| || | |||||||||||||| |
|
|
| T |
47442201 |
gcaaaacaagtaacaaaagtg |
47442221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 2786564 - 2786645
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtcagctttgaag-gattaggccgccttaactcgcctcgcgagta |
174 |
Q |
| |
|
||||||||| |||||| |||||| |||||||||||||||||||||| | | || |||||| ||||||||||||| |||| |
|
|
| T |
2786564 |
gcgagttgatgtttcttcaccagtgggtttctgccacgtcagctttgaggagttttagccgccctaactcgcctcgcaagta |
2786645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1487 (Bit Score: 111; Significance: 9e-56; HSPs: 2)
Name: scaffold1487
Description:
Target: scaffold1487; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 1530 - 1344
Alignment:
| Q |
35 |
gccttttataccatgcctattctgattgaactcgccatggcaagtaatctactcgcc-tcgcgagttgagctttctttcccagtgagtttctgccacgtc |
133 |
Q |
| |
|
||||||||||| |||| | ||||||||||||||||||||||| ||||| | |||||| | |||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
1530 |
gccttttatactatgcatgttctgattgaactcgccatggcaggtaatttgctcgccatggcgagttgagctttctttaccagtgggtttctgccacgtc |
1431 |
T |
|
| Q |
134 |
agctttgaaggattaggccgccttaactcgcctcgcgagtaattttgctcatcatggcaagttagctcgccttcaacttgccatggc |
220 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |||| |||||||| |
|
|
| T |
1430 |
agatttgagggattaggccgccttaactcgcctcgcgagtaattttgctcgccatggctagttagctcgccatgaactcgccatggc |
1344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1487; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 334 - 495
Target Start/End: Complemental strand, 1208 - 1044
Alignment:
| Q |
334 |
agtgtcttgaggt-caattcctgcacaaaggggtatagtaagatataaa--gcgtaatagggcaattgtccatctttttctcagcttttccctaaataac |
430 |
Q |
| |
|
|||||||||| || ||||||||||||||| || || ||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
1208 |
agtgtcttgacgttcaattcctgcacaaatggatagagtaagatataaaaagcgtaatagggcaattgttcatctttttctcggcttttccctaaataac |
1109 |
T |
|
| Q |
431 |
ttgtaagataagtaacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatc |
495 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
1108 |
ttttaagacaagtaacaaaagtgctttaattgtaacatgtaattaactactttctggcacttatc |
1044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 346 - 496
Target Start/End: Complemental strand, 14215 - 14064
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagatat---aaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataag |
442 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| ||||||||||||||||||| | || ||| |||| ||||||||||||||||||||| | | ||| |
|
|
| T |
14215 |
tcaattcctgcacaaatgggtagagtaagatataaaaaagcgtaatagggcaattat-cacttttctctcggcttttccctaaataacttgtgaaacaag |
14117 |
T |
|
| Q |
443 |
taacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatca |
496 |
Q |
| |
|
||||||| ||| | ||| | ||||| |||| |||| |||| |||||||||||| |
|
|
| T |
14116 |
taacaaatgtgacgtaaat-aaacattgaataaactactttttggcacttatca |
14064 |
T |
|
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Target: scaffold0045 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 2105 - 2016
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtcagctttgaaggattaggccgccttaactcgcctcgcgagtaattttgctc |
183 |
Q |
| |
|
||||||| ||||||||| ||| || |||| |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| |
|
|
| T |
2105 |
gcgagttaagctttcttcccctatgggtttttgccacgtcagctttgaagggctaggccgccttagttcgcctcgcgagtaatgttgctc |
2016 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 8487 - 8398
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtcagctttgaaggattaggccgccttaactcgcctcgcgagtaattttgctc |
183 |
Q |
| |
|
||||||| ||||||||| ||| || |||| ||||||||||| |||||||| ||||||||| || |||||||||||||||| |||||| |
|
|
| T |
8487 |
gcgagttaagctttcttcccctatgggtttttgccacgtcagatttgaagggctaggccgccatagttcgcctcgcgagtaatattgctc |
8398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 453
Target Start/End: Complemental strand, 11357320 - 11357202
Alignment:
| Q |
336 |
tgtcttgaggtcaattcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttg |
433 |
Q |
| |
|
||||||||| |||| ||||||||||| |||| ||||||||| |||||||||| |||||||| || | | |||||| |||||||||| ||||||||| |
|
|
| T |
11357320 |
tgtcttgagttcaaatcctgcacaaatgggtgaagtaagatagataaagcgtaaaagggcaataatcact-tatttctcggcttttccctcaataacttg |
11357222 |
T |
|
| Q |
434 |
taagataagtaacaaaagtg |
453 |
Q |
| |
|
||| | |||||||||||||| |
|
|
| T |
11357221 |
taaaacaagtaacaaaagtg |
11357202 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 453
Target Start/End: Original strand, 4973016 - 4973123
Alignment:
| Q |
347 |
caattcctgcacaaaggggtatagtaagatataaa--gcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagta |
444 |
Q |
| |
|
||||||||| |||| |||||| ||||||||||||| || ||||||| || |||| || | |||||| ||||||||||| ||||||||||| | ||||| |
|
|
| T |
4973016 |
caattcctgtacaatggggtagagtaagatataaaaagcataataggacatttgttca-cattttcttggcttttccctagataacttgtaaaacaagta |
4973114 |
T |
|
| Q |
445 |
acaaaagtg |
453 |
Q |
| |
|
||||||||| |
|
|
| T |
4973115 |
acaaaagtg |
4973123 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 455
Target Start/End: Complemental strand, 2267502 - 2267392
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagat--ataaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagt |
443 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||||||||||||| |||| | || ||| |||| |||||| ||| |||||||||| | |||||| |
|
|
| T |
2267502 |
tcaattcctgcacaaatgggtagagtaagatgaataaagcgtaataggtcaataat-cacttttctctcggctttttcctgaataacttgtgaaataagt |
2267404 |
T |
|
| Q |
444 |
aacaaaagtgtc |
455 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
2267403 |
aacaaacgtgtc |
2267392 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 453
Target Start/End: Complemental strand, 36020844 - 36020726
Alignment:
| Q |
336 |
tgtcttgaggtcaattcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttg |
433 |
Q |
| |
|
||||||||| || | ||||||||||| |||| ||||||||| |||||||||| |||||||| || | | ||||||||||||||||| ||||||||| |
|
|
| T |
36020844 |
tgtcttgagttcgaatcctgcacaaatgggtgaagtaagatagataaagcgtaaaagggcaataatcact-tatttctcagcttttcccttaataacttg |
36020746 |
T |
|
| Q |
434 |
taagataagtaacaaaagtg |
453 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
36020745 |
caaaacaagtaacaaaagtg |
36020726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 5063128 - 5063076
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagat--ataaagcgtaatagggcaat |
396 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
5063128 |
tcaattcctgcacaaatgggtatagtaagatgaataaagcgtaataggtcaat |
5063076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 449
Target Start/End: Complemental strand, 7933018 - 7932917
Alignment:
| Q |
349 |
attcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagtaac |
446 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||||||| ||| ||||| ||| |||| ||||||||||| ||||||||||| | |||| || |
|
|
| T |
7933018 |
attcctgcacaaatgggtagagtaagatgactaaagcgtaataggtcaaaattccat-tttctctcggcttttccctagataacttgtaaaacaagttac |
7932920 |
T |
|
| Q |
447 |
aaa |
449 |
Q |
| |
|
||| |
|
|
| T |
7932919 |
aaa |
7932917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 38658278 - 38658330
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagat--ataaagcgtaatagggcaat |
396 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||||||||||||| |||| |
|
|
| T |
38658278 |
tcaattcctgcacaaatgggtagagtaagatgaataaagcgtaataggtcaat |
38658330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 5063381 - 5063341
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtca |
134 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
5063381 |
gcgacttgagctttctttgccagtgggtttctgccacgtca |
5063341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 24852426 - 24852356
Alignment:
| Q |
96 |
gagttgagctttctttcccagtgagtttctgccacgtcagctttgaag-gattaggccgccttaactcgcc |
165 |
Q |
| |
|
||||||| ||||||| || |||| |||||| ||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
24852426 |
gagttgatctttcttcccaagtgggtttctaccacgtcagctttgaggagattaggccgccttaactcgcc |
24852356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 459
Target Start/End: Complemental strand, 11909006 - 11908884
Alignment:
| Q |
335 |
gtgtcttgaggtcaattcctgcacaaaggggtatagtaagat--ataaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataactt |
432 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||| |||||||| |||||| |||||||| ||| || ||| |||| ||||||||||| || |||| |
|
|
| T |
11909006 |
gtgtcttgagttcaattcctgcacaaatgggtagagtaagataaataaagtgtaataggctaat----cacttttctctcggcttttccctagattactt |
11908911 |
T |
|
| Q |
433 |
gtaagataagtaacaaaagtgtcttaa |
459 |
Q |
| |
|
|| | | |||||||||||||| ||||| |
|
|
| T |
11908910 |
gtgaaacaagtaacaaaagtgccttaa |
11908884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 33034609 - 33034699
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtcagctttga-aggattaggccgccttaactcgcctcgcgagtaattttgctc |
183 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||| ||||||| | ||| ||||||||||||| ||||||||||||||| ||| |||| |
|
|
| T |
33034609 |
gcgagttgagctttcttcccctataggtttctgccacatcagcttcaagaggcttaggccgccttagctcgcctcgcgagtagtttggctc |
33034699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 43670865 - 43670969
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagat--ataaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagt |
443 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||||||||||||| |||| | || ||| |||| |||||||||| |||||||||| | | |||| |
|
|
| T |
43670865 |
tcaattcctgcacaaatgggtagagtaagatgaataaagcgtaataggtcaataat-cacttttctctcggcttttccctgaataacttgtgaaacaagt |
43670963 |
T |
|
| Q |
444 |
aacaaa |
449 |
Q |
| |
|
|||||| |
|
|
| T |
43670964 |
aacaaa |
43670969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 495
Target Start/End: Complemental strand, 22196967 - 22196895
Alignment:
| Q |
423 |
taaataacttgtaagataagtaacaaaagtgtcttaattgtaacatggaattaactgctttctggcacttatc |
495 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| || | |||||| |||||||| ||| ||||||||||| |
|
|
| T |
22196967 |
taaataacttgtaaaacaagtaacaaaagtgtctaaaatataacatataattaactaatttatggcacttatc |
22196895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 3363106 - 3363146
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtca |
134 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
3363106 |
gcgacttgagctttctttcccattgggtttctgccacgtca |
3363146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 3363351 - 3363398
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagat--ataaagcgtaatagg |
391 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
3363351 |
tcaattcctgcacaaatgggtaaagtaagatgaataaagcgtaatagg |
3363398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 203106 - 203210
Alignment:
| Q |
346 |
tcaattcctgcacaaaggggtatagtaagat--ataaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaagataagt |
443 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || ||||||||||||||| |||| | ||| ||| |||| |||||||||| |||||||||| | | |||| |
|
|
| T |
203106 |
tcaattcctgcacaaatgggtagagtaatatgaataaagcgtaataggtcaataat-catttttctctcggcttttccctgaataacttgtgaaacaagt |
203204 |
T |
|
| Q |
444 |
aacaaa |
449 |
Q |
| |
|
|||||| |
|
|
| T |
203205 |
aacaaa |
203210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0510
Description:
Target: scaffold0510; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 453
Target Start/End: Original strand, 2142 - 2256
Alignment:
| Q |
340 |
ttgaggtcaattcctgcacaaaggggtatagtaagata--taaagcgtaatagggcaattgtccatctttttctcagcttttccctaaataacttgtaag |
437 |
Q |
| |
|
||||| |||| |||||| |||| |||| ||||||||| |||||||||| |||||||| || | | ||||||||||||||||| ||||||||| || |
|
|
| T |
2142 |
ttgagttcaaatcctgcgcaaatgggtgaagtaagatagataaagcgtaaaagggcaataatcact-tatttctcagcttttccctcaataacttgcaaa |
2240 |
T |
|
| Q |
438 |
ataagtaacaaaagtg |
453 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
2241 |
acaagtaacaaaagtg |
2256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 1879 - 2003
Alignment:
| Q |
94 |
gcgagttgagctttctttcccagtgagtttctgccacgtcagctttgaaggattaggccgccttaactcgcctcgcgagtaattttgctcatcatggcaa |
193 |
Q |
| |
|
|||||||||| || ||| ||| || |||| ||||||||||||| | | || || ||||||||||||||||||||||||| || || |||||| | |
|
|
| T |
1879 |
gcgagttgaggttccttcgccattgggtttgtgccacgtcagctgttagagactaaaccgccttaactcgcctcgcgagtaaattcattcgccatggcga |
1978 |
T |
|
| Q |
194 |
gttagctcgccttcaacttgccatg |
218 |
Q |
| |
|
|| ||||||||||| ||| |||||| |
|
|
| T |
1979 |
gtaagctcgccttccactcgccatg |
2003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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