View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8369_high_18 (Length: 294)
Name: NF8369_high_18
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 41484274 - 41484551
Alignment:
| Q |
1 |
caacaaaaggctgatgaaaaaatgatgtacttggcaaaagaacataaggcacacttttcattttcctattacctacagtttttaattcagttgcatgtat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41484274 |
caacaaaaggctgatgaaaaaatgatgtacttggcagaagaacataaggcacacttttcattttcctattacctacagtttttaattcagttgcatgtat |
41484373 |
T |
|
| Q |
101 |
atacttaagttttaaggactcttttggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41484374 |
atacttaagttttaaggactcttttggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaa |
41484473 |
T |
|
| Q |
201 |
caggcattggaattggagatagaacggctgaaaggagctttccaggtaatgaatcacattggagagactgatatagat |
278 |
Q |
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| T |
41484474 |
caggcattggaattggagatagaacggctaaaaggagctttccaggtaatgaatcacattggagagactgatatagat |
41484551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 40751523 - 40751794
Alignment:
| Q |
1 |
caacaaaaggctgatgaaaaaatgatgtacttggcaaaagaacataaggcacacttttcattttcctattacctacagtttttaattcagttgcatgtat |
100 |
Q |
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|||||||| |||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||||| | |||||||||||||||||| ||||||| |
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| T |
40751523 |
caacaaaaagctgatgaaaaaatgatgtatttggcggaagaacataaggcacgcatttcattttcctattatcgacagtttttaattcagtttcatgtat |
40751622 |
T |
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| Q |
101 |
atacttaagttttaaggactcttttggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaa |
200 |
Q |
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| T |
40751623 |
atacttaggttttgaggactcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaattcatgacctggagagaggactggatgcaaaa |
40751722 |
T |
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| Q |
201 |
caggcattggaattggagatagaacggctgaaaggagctttccaggtaatgaatcacattggagagactgat |
272 |
Q |
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| T |
40751723 |
caagcattggaattggagatagaacagctgaaaggagctttccaggtaatgaatcacattggagagactgat |
40751794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 41477268 - 41477544
Alignment:
| Q |
1 |
caacaaaaggctgatgaaaaaatgatgtacttggcaaaagaacataaggcacacttttcattttcctattacctacagtttttaattcagttgcatgtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||| ||| ||||||||||||||||||| ||| ||| |
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| T |
41477268 |
caacaaaaggctgatgaaaaaatgatgtctttggctgaagaacataaggcaagtatttcactttccttttatctacagtttttaattcagtaacatttat |
41477367 |
T |
|
| Q |
101 |
atacttaagttttaaggactcttttggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaa |
200 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41477368 |
atacttcagttttgaggactcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaattcatgacctggagagaggacttgatgcaaaa |
41477467 |
T |
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| Q |
201 |
caggcattggaattggagatagaacggctgaaaggagctttccaggtaatgaatcacattggagagactgatataga |
277 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41477468 |
caagcattggagttggagatagaacggctgaaaggagctttccaggtaatgaatcacattggagagactgatctaga |
41477544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 41470398 - 41470656
Alignment:
| Q |
13 |
gatgaaaaaatgatgtacttggcaaaagaacataaggcacacttttcattttcctattacctacagtttttaattcagttgcatgtat-atacttaagtt |
111 |
Q |
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||||||||||||||||| ||||| |||| |||||||||||| |||| ||||||| ||| ||||||| |||| ||||||| |||||| | ||||||||| |
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| T |
41470398 |
gatgaaaaaatgatgtatttggccgaagagcataaggcacacatttcgttttccttttatctacagtatttagttcagtta-atgtatcaaacttaagtt |
41470496 |
T |
|
| Q |
112 |
ttaaggactcttttggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaacaggcattgga |
211 |
Q |
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|| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||| |
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| T |
41470497 |
ttgagaactcttttggttggatgatgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggtcttggtgcaaaacaaacattgga |
41470596 |
T |
|
| Q |
212 |
attggagatagaacggctgaaaggagctttccaggtaatgaatcacattggagagactgatataga |
277 |
Q |
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|||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||| |||| |
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| T |
41470597 |
attg------gaacggctgaaaggagctctccaggtaatgagtcacattcgagagactgatctaga |
41470656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 16408443 - 16408172
Alignment:
| Q |
1 |
caacaaaaggctgatgaaaaaatgatgtacttggcaaaagaacataaggcacacttttcattttcctattacctacagtttttaattcagttgcatgtat |
100 |
Q |
| |
|
||||||||||| ||||||||||||||| || || |||| ||||||||||| ||||||||| || ||| || |||||||||||||||| ||||| | |
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| T |
16408443 |
caacaaaaggccgatgaaaaaatgatgcgtttagctgaagaccataaggcacagatttcatttttcttttatctcgagtttttaattcagttacatgtgt |
16408344 |
T |
|
| Q |
101 |
atacttaagttttaaggactcttttggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaa |
200 |
Q |
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||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16408343 |
ccactcaagttttgaggactattttggttgtatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgcaaaa |
16408244 |
T |
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| Q |
201 |
caggcattggaattggagatagaacggctgaaaggagctttccaggtaatgaatcacattggagagactgat |
272 |
Q |
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| T |
16408243 |
caagcattggagttggaagttgaacggctaagaggagctttccaggtaatgaatcacattggagagactgat |
16408172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 116 - 249
Target Start/End: Original strand, 52481057 - 52481190
Alignment:
| Q |
116 |
ggactcttttggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaacaggcattggaattg |
215 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |||||||| ||||| |||||||||||| |
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| T |
52481057 |
ggactcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattggaattg |
52481156 |
T |
|
| Q |
216 |
gagatagaacggctgaaaggagctttccaggtaa |
249 |
Q |
| |
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|| || |||| | ||| || ||||||| |||||| |
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| T |
52481157 |
gaaattgaacagttgagagaagctttcgaggtaa |
52481190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 52472298 - 52472389
Alignment:
| Q |
1 |
caacaaaaggctgatgaaaaaatgatgtacttggcaaaagaacataaggcacacttttcattttcctattacctacagtttttaattcagtt |
92 |
Q |
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|||| |||||| ||||||||||||||| | ||||| ||||||||||||||| | ||| |||||||| | | |||| | |||||||||||| |
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| T |
52472298 |
caacgaaaggccgatgaaaaaatgatgcatttggctgaagaacataaggcacgcatttgattttcctttcatgtacaatatttaattcagtt |
52472389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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