View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8369_high_23 (Length: 244)

Name: NF8369_high_23
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8369_high_23
NF8369_high_23
[»] chr6 (8 HSPs)
chr6 (1-233)||(17749773-17750005)
chr6 (1-185)||(96938-97123)
chr6 (4-187)||(27156735-27156918)
chr6 (185-233)||(27156545-27156593)
chr6 (179-242)||(97261-97324)
chr6 (179-233)||(10895095-10895149)
chr6 (189-231)||(6059905-6059947)
chr6 (103-137)||(15667412-15667446)
[»] chr7 (11 HSPs)
chr7 (1-231)||(25156576-25156799)
chr7 (1-152)||(8363404-8363556)
chr7 (1-144)||(31421635-31421779)
chr7 (179-242)||(8363739-8363802)
chr7 (179-242)||(37126635-37126698)
chr7 (180-233)||(10509279-10509332)
chr7 (117-185)||(37126430-37126497)
chr7 (185-233)||(41596726-41596774)
chr7 (188-231)||(19340993-19341036)
chr7 (103-137)||(41596500-41596534)
chr7 (1-45)||(33531810-33531854)
[»] chr1 (9 HSPs)
chr1 (1-187)||(11052748-11052935)
chr1 (1-103)||(51065346-51065449)
chr1 (1-187)||(27132717-27132896)
chr1 (4-181)||(25536864-25537040)
chr1 (179-231)||(51065093-51065145)
chr1 (179-242)||(3288204-3288267)
chr1 (179-233)||(47074528-47074582)
chr1 (179-231)||(4692647-4692699)
chr1 (147-187)||(51065280-51065320)
[»] chr4 (11 HSPs)
chr4 (1-185)||(55404710-55404895)
chr4 (1-144)||(14797621-14797765)
chr4 (179-242)||(55405033-55405096)
chr4 (179-233)||(16401063-16401117)
chr4 (186-233)||(14461648-14461695)
chr4 (189-233)||(53816249-53816293)
chr4 (92-171)||(44504580-44504659)
chr4 (179-242)||(44504757-44504820)
chr4 (103-137)||(14461421-14461455)
chr4 (110-150)||(2665096-2665136)
chr4 (185-233)||(42883689-42883737)
[»] chr3 (12 HSPs)
chr3 (4-185)||(8425542-8425724)
chr3 (1-150)||(2736266-2736416)
chr3 (1-150)||(40925312-40925462)
chr3 (1-150)||(22126781-22126931)
chr3 (179-242)||(8425341-8425404)
chr3 (179-242)||(19972046-19972109)
chr3 (179-233)||(54788867-54788921)
chr3 (189-233)||(14195349-14195393)
chr3 (103-137)||(22509909-22509943)
chr3 (194-231)||(14835315-14835352)
chr3 (103-144)||(39621799-39621840)
chr3 (185-233)||(22509669-22509717)
[»] chr5 (10 HSPs)
chr5 (1-150)||(22270621-22270771)
chr5 (179-231)||(19676980-19677032)
chr5 (185-233)||(35635106-35635154)
chr5 (185-233)||(38395167-38395215)
chr5 (185-233)||(23121066-23121114)
chr5 (103-137)||(14009350-14009384)
chr5 (103-137)||(23121306-23121340)
chr5 (103-137)||(28313163-28313197)
chr5 (185-233)||(14009576-14009624)
chr5 (179-243)||(19663153-19663217)
[»] chr2 (7 HSPs)
chr2 (1-185)||(5088363-5088547)
chr2 (103-187)||(41317895-41317979)
chr2 (179-243)||(41318120-41318184)
chr2 (179-233)||(9844854-9844908)
chr2 (103-137)||(43525106-43525140)
chr2 (189-233)||(17738119-17738163)
chr2 (185-233)||(43525332-43525380)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-144)||(41966-42110)
[»] chr8 (13 HSPs)
chr8 (2-144)||(33363359-33363502)
chr8 (1-150)||(42809295-42809445)
chr8 (32-187)||(32381920-32382071)
chr8 (32-187)||(32435875-32436026)
chr8 (1-174)||(18427343-18427505)
chr8 (1-132)||(42466449-42466580)
chr8 (187-233)||(20098980-20099026)
chr8 (185-233)||(12868395-12868443)
chr8 (179-231)||(18427646-18427698)
chr8 (103-137)||(12868635-12868669)
chr8 (180-233)||(33236605-33236658)
chr8 (202-242)||(33363715-33363755)
chr8 (1-132)||(42479011-42479143)
[»] scaffold0129 (1 HSPs)
scaffold0129 (97-137)||(7860-7900)


Alignment Details
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 17749773 - 17750005
Alignment:
Q  1 ctcttgttgaaaaatattatccatggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatca 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  17749773 ctcttgttgaaaaatattatccatggattttagtgatcaagagaatattaatttgctatttcatcttcgatatttcttttttaatgttcgccaattatca 17749872  T
Q  101 actttgaaaaatttatcaactattcaagaattatgctaatgtttagctgccaatggacaaaccaaaaaatacttattgattgatagggaaattaatgcat 200  Q
    |||||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||| |||||||||| | ||||||||||||    
T  17749873 actttgaagaatttatctactattcaagaattatgctaatgtttgactgccaatggacaaaccataaaatacttcttgattgataagaaaattaatgcat 17749972  T
Q  201 atattagttctgagtcaattattgatgatttca 233  Q
     ||||||||| |||||||||||| |||||||||    
T  17749973 gtattagttccgagtcaattattaatgatttca 17750005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 96938 - 97123
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    |||||||| ||||||||||||| |||||||| |||||||| |||||| | || |||| |||| |||||||| ||||| ||||| ||| |||||||| |||    
T  96938 ctcttgttcaaaaatattatcccatggattttagtgatcatgagaagatgaaattgccatttgatcttcgacatttcctttttgatgttcgccaatcatc 97037  T
Q  100 aactttgaaaaatttatcaactattcaagaattatgctaatgtttagctgccaatggacaaaccaaaaaatacttattgattgata 185  Q
    |||||| || ||||||||||||||||||||||| |||| |||||| ||||||| |||||||| |||| ||||||| ||||||||||    
T  97038 aactttcaagaatttatcaactattcaagaattgtgctcatgtttggctgccactggacaaaacaaagaatacttcttgattgata 97123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 187
Target Start/End: Complemental strand, 27156918 - 27156735
Alignment:
Q  4 ttgttgaaaaatattatc-catggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatcaac 102  Q
    |||||||||||||||||| |||| |||| |||| |||||| | |  ||||||   |||| |||||| | ||||  ||||| |||||||||||| ||||||    
T  27156918 ttgttgaaaaatattatcacatgaattttagtg-tcaagatacgactaatttttcattttatcttcaacattttctttttgatgctcgccaatcatcaac 27156820  T
Q  103 tttgaaaaatttatcaactattcaagaattatgctaatgtttagctgccaatggacaaaccaaaaaatacttattgattgatagg 187  Q
    |||||| |||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  27156819 tttgaagaatttatcaactattcaagaattatgcccatgtttggctaccaatggacaaaccaaaaaatacttcttgattgatagg 27156735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 27156593 - 27156545
Alignment:
Q  185 agggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27156593 agggaaattaatgcatgtattagttctgagtcaattattgatgatttca 27156545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 97261 - 97324
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgatttcatctcactcg 242  Q
    ||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||  |||||||    
T  97261 attgaaagggaaattagtgcatctattagttccgagtcaattattgatgatttcaagtcactcg 97324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 10895149 - 10895095
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    ||||| |||||||||| ||||| ||||| ||| ||||||||||||||||||||||    
T  10895149 attgaaagggaaattagtgcatctattaattccgagtcaattattgatgatttca 10895095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 6059947 - 6059905
Alignment:
Q  189 aaattaatgcatatattagttctgagtcaattattgatgattt 231  Q
    |||||||||||| ||||||||  ||||||||||||||||||||    
T  6059947 aaattaatgcatgtattagtttcgagtcaattattgatgattt 6059905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 15667446 - 15667412
Alignment:
Q  103 tttgaaaaatttatcaactattcaagaattatgct 137  Q
    |||||| ||||||||||||||||||||||||||||    
T  15667446 tttgaagaatttatcaactattcaagaattatgct 15667412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 25156799 - 25156576
Alignment:
Q  1 ctcttgttgaaaaatattatccatggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatca 100  Q
    ||||||||||||||||||||  |||||||| |||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25156799 ctcttgttgaaaaatattatttatggattttagtgatcaagggaagattaatttgctatttcatcttcgatattt-ttttttcatgctcgccaattatca 25156701  T
Q  101 actttgaaaaatttatcaactattcaagaattatgctaatgtttagctgccaatggacaaaccaaaaaatacttattgattgatagggaaattaatgcat 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25156700 actttgaaaa-tttatcaactattcaagaattatgctaatgttt-----ccaatggacaaaccaaaaaatacttcttgattgatagggaaattaatgcat 25156607  T
Q  201 atattagttctgagtcaattattgatgattt 231  Q
     | ||||||||||||||||||||||||||||    
T  25156606 gtgttagttctgagtcaattattgatgattt 25156576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 8363404 - 8363556
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    |||||||||||||||||||||| |||||||| |||||| |||||||  ||||||||| ||||||||||||| ||||| ||||| | |||||||||| |||    
T  8363404 ctcttgttgaaaaatattatcccatggattttagtgataaagagaaaattaatttgccatttcatcttcgacatttcctttttgaggctcgccaatcatc 8363503  T
Q  100 aactttgaaaaatttatcaactattcaagaattatgctaatgtttagctgcca 152  Q
    |||||||||||||||||||||||| ||||||||||||| |||||| |||||||    
T  8363504 aactttgaaaaatttatcaactatccaagaattatgctcatgtttggctgcca 8363556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 31421635 - 31421779
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    |||||||||||||||||||||| ||| |||| |||||||| |||||| ||||||||| |||||||||||   ||||| ||||| | |||||  ||| |||    
T  31421635 ctcttgttgaaaaatattatcccatgaattttagtgatcaggagaagattaatttgccatttcatcttcaccatttcctttttgaggctcgtgaatcatc 31421734  T
Q  100 aactttgaaaaatttatcaactattcaagaattatgctaatgttt 144  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  31421735 aactttgaaaaatttatcaactattcaagaattatgctcatgttt 31421779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 8363739 - 8363802
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgatttcatctcactcg 242  Q
    ||||| ||||||||||  |||| |||||||||||| |||||||||||||||||||  |||||||    
T  8363739 attgaaagggaaattagcgcatgtattagttctgaatcaattattgatgatttcaagtcactcg 8363802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 37126635 - 37126698
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgatttcatctcactcg 242  Q
    ||||| |||||||||| ||||| ||||||||| |||| |||||||||||||||||  |||||||    
T  37126635 attgaaagggaaattagtgcatctattagttccgagttaattattgatgatttcaagtcactcg 37126698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 10509332 - 10509279
Alignment:
Q  180 ttgatagggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    |||| |||||||||| ||||| ||||||||| ||||| ||||||||||||||||    
T  10509332 ttgaaagggaaattagtgcatgtattagttccgagtctattattgatgatttca 10509279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 37126430 - 37126497
Alignment:
Q  117 caactattcaagaattatgctaatgtttagctgccaatggacaaaccaaaaaatacttattgattgata 185  Q
    |||||||||||||||| |||| |||||| |||||| | ||||||| |||| ||||||| ||||||||||    
T  37126430 caactattcaagaattgtgctcatgtttggctgcc-acggacaaaacaaagaatacttcttgattgata 37126497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 41596726 - 41596774
Alignment:
Q  185 agggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    |||||||||| ||||  |||||||||||||||| |||||||||||||||    
T  41596726 agggaaattagtgcaagtattagttctgagtcagttattgatgatttca 41596774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 19340993 - 19341036
Alignment:
Q  188 gaaattaatgcatatattagttctgagtcaattattgatgattt 231  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||    
T  19340993 gaaattagtgcatgtattagttctgagtcaactattgatgattt 19341036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 41596500 - 41596534
Alignment:
Q  103 tttgaaaaatttatcaactattcaagaattatgct 137  Q
    |||||| ||||||||||||||||||||||||||||    
T  41596500 tttgaagaatttatcaactattcaagaattatgct 41596534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33531810 - 33531854
Alignment:
Q  1 ctcttgttgaaaaatattatccatggatttcagtgatcaagagaa 45  Q
    |||||||||||||||| |||||||| |||||| | ||||||||||    
T  33531810 ctcttgttgaaaaatactatccatgaatttcaattatcaagagaa 33531854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 11052935 - 11052748
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    ||||||||| |||||||||||| |||||||| ||||||||||||||| ||| ||| | ||||||||||||| ||| | ||||| |||||||||||| |||    
T  11052935 ctcttgttgcaaaatattatcccatggattttagtgatcaagagaagattactttaccatttcatcttcgacattccctttttgatgctcgccaatcatc 11052836  T
Q  100 aactttgaaaaatttatcaactattcaagaattatgctaatgtttagctgccaatggacaaaccaaaaaatacttattgattgatagg 187  Q
    ||||||||| |||||||||||||||||||||||||||| |||||| | || |||||||||| ||||||||||||| ||| ||||||||    
T  11052835 aactttgaataatttatcaactattcaagaattatgctcatgtttggttgtcaatggacaacccaaaaaatacttgttgcttgatagg 11052748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 51065449 - 51065346
Alignment:
Q  1 ctcttgttgaaaaatattat-ccatggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||| | ||||||||||| ||||||| ||||| |||||||||||| |||    
T  51065449 ctcttgttgaaaaatattattccatgaattttagtgatcaagagaagattaatttaccatttcatcttcaatatttcctttttgatgctcgccaatcatc 51065350  T
Q  100 aact 103  Q
    ||||    
T  51065349 aact 51065346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 27132717 - 27132896
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||| | |||||                 || |||    
T  27132717 ctcttgttgaaaaatattttcccatggatttcagtgatcaagagaagattaatttgccatttcatcttctacatttc-----------------atcatc 27132799  T
Q  100 aactttgaaaaatttatcaactattcaagaattatgctaatgtttagctgc---------caatggacaaaccaaaaaatacttattgattgatagg 187  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||         |||||||||| |||||||||||| |||| ||||||||    
T  27132800 aactttgaaaaatttatcaactattcaagaattatgctcatgtttggctgccactcctgccaatggacaacccaaaaaatactcattgcttgatagg 27132896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 25536864 - 25537040
Alignment:
Q  4 ttgttgaaaaatattatc-catggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatcaac 102  Q
    ||||||||||| |||||| |||| |||| |||||||||||||||  |||||||| |||||| | || |  |||| ||||| ||| || | ||| ||||||    
T  25536864 ttgttgaaaaa-attatctcatgaattttagtgatcaagagaagagtaatttgcaatttcaacctcaacgtttccttttttatgttctctaatcatcaac 25536962  T
Q  103 tttgaaaaatttatcaactattcaagaattatgctaatgtttagctgccaatggacaaaccaaaaaatacttattgatt 181  Q
    |||||| | |||||||| ||||  ||||||||| | |||||| ||||||||||||||||||||||| ||||| ||||||    
T  25536963 tttgaaga-tttatcaaatattatagaattatgtttatgtttggctgccaatggacaaaccaaaaattacttcttgatt 25537040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 51065145 - 51065093
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgattt 231  Q
    ||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  51065145 attgaaagggaaattagtgcatgtattagttccgagtcaattattgatgattt 51065093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 3288267 - 3288204
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgatttcatctcactcg 242  Q
    ||||| || ||||||| ||||| ||||||||| ||||||||||| ||||||||||  |||||||    
T  3288267 attgaaagcgaaattagtgcatgtattagttccgagtcaattatggatgatttcaagtcactcg 3288204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 47074582 - 47074528
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    ||||| ||| |||||| || || ||||||||| ||||||||||||||||||||||    
T  47074582 attgaaaggaaaattagtgaatgtattagttccgagtcaattattgatgatttca 47074528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 4692647 - 4692699
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgattt 231  Q
    ||||| ||| ||||||||| || ||||||||| || |||||||||||||||||    
T  4692647 attgaaaggaaaattaatgaatgtattagttccgaatcaattattgatgattt 4692699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 51065320 - 51065280
Alignment:
Q  147 ctgccaatggacaaaccaaaaaatacttattgattgatagg 187  Q
    |||||||| |||||||||||||| |||| ||||||||||||    
T  51065320 ctgccaattgacaaaccaaaaaacacttcttgattgatagg 51065280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 55404710 - 55404895
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    |||||||| ||||||||||||| |||||||| |||||||| |||||| |||| |||| |||| |||||||| ||||| ||||| ||| |||||||| |||    
T  55404710 ctcttgttcaaaaatattatcccatggattttagtgatcatgagaagattaaattgccatttgatcttcgagatttcctttttgatgttcgccaatcatc 55404809  T
Q  100 aactttgaaaaatttatcaactattcaagaattatgctaatgtttagctgccaatggacaaaccaaaaaatacttattgattgata 185  Q
    |||||| || ||||||||||||||||||||||| |||| |||||| ||||||| |||||||| |||| ||||||| ||||||||||    
T  55404810 aactttcaagaatttatcaactattcaagaattgtgctcatgtttggctgccactggacaaaacaaagaatacttcttgattgata 55404895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 14797765 - 14797621
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    |||||||||||||||||||||| |||||||| ||||| || || ||  ||||||||| ||||||||||| | ||||| ||||| | |||||  ||| |||    
T  14797765 ctcttgttgaaaaatattatcccatggattttagtgaccaggaaaacattaatttgccatttcatcttcaacatttcctttttgaggctcgtgaatcatc 14797666  T
Q  100 aactttgaaaaatttatcaactattcaagaattatgctaatgttt 144  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  14797665 aactttgaaaaatttatcaactattcaagaattatgctcatgttt 14797621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 55405033 - 55405096
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgatttcatctcactcg 242  Q
    ||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||  |||||||    
T  55405033 attgaaagggaaattagtgcatctattagttccgagtcaattattgatgatttcaagtcactcg 55405096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 16401063 - 16401117
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    ||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  16401063 attgaaagggaaattagtgcatgtattagttccgagtcaattattgatgatttca 16401117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 14461648 - 14461695
Alignment:
Q  186 gggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    ||||||||||||||  |||||||||||||||| |||||||||||||||    
T  14461648 gggaaattaatgcaagtattagttctgagtcagttattgatgatttca 14461695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 53816293 - 53816249
Alignment:
Q  189 aaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||||    
T  53816293 aaattagtgcatgtattagttccgagtcaattattgatgatttca 53816249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 44504580 - 44504659
Alignment:
Q  92 caattatcaactttgaaaaatttatcaactattcaagaattatgctaatgtttagctgccaatggacaaaccaaaaaata 171  Q
    |||| ||||||||| |||||||||| ||||||| || |||||||||  |||||   ||||||||||||| | ||||||||    
T  44504580 caatcatcaactttaaaaaatttattaactattaaaaaattatgctcttgtttgattgccaatggacaacctaaaaaata 44504659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 44504757 - 44504820
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgatttcatctcactcg 242  Q
    ||||| ||| ||||||| |||| ||||||||| || |||||||||||||||||||  |||||||    
T  44504757 attgaaaggaaaattaaagcatgtattagttccgaatcaattattgatgatttcagatcactcg 44504820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 14461421 - 14461455
Alignment:
Q  103 tttgaaaaatttatcaactattcaagaattatgct 137  Q
    |||||| ||||||||||||||||||||||||||||    
T  14461421 tttgaagaatttatcaactattcaagaattatgct 14461455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 2665136 - 2665096
Alignment:
Q  110 aatttatcaactattcaagaattatgctaatgtttagctgc 150  Q
    ||||||||||||||||||||||||||||  ||||| |||||    
T  2665136 aatttatcaactattcaagaattatgctcgtgtttggctgc 2665096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 42883737 - 42883689
Alignment:
Q  185 agggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    |||||||||| |||| ||||||||||||||| | |||||||| ||||||    
T  42883737 agggaaattagtgcaaatattagttctgagttagttattgataatttca 42883689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 8425724 - 8425542
Alignment:
Q  4 ttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatcaac 102  Q
    ||||| ||||||||||||| |||||||| |||||||| | |||| |||| |||| |||| |||||||| ||||| ||||| ||| |||||||| ||||||    
T  8425724 ttgttcaaaaatattatcccatggattttagtgatcatgcgaagattaaattgccatttgatcttcgacatttcctttttgatgttcgccaatcatcaac 8425625  T
Q  103 tttgaaaaatttatcaactattcaagaattatgctaatgtttagctgccaatggacaaaccaaaaaatacttattgattgata 185  Q
    ||| || ||||||||||||||||||||||| |||| |||||| ||||||| |||||||| |||| ||||||| ||||||||||    
T  8425624 tttcaagaatttatcaactattcaagaattgtgctcatgtttggctgccactggacaaaacaaagaatacttcttgattgata 8425542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 2736266 - 2736416
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    |||||||||||||||||||||| |||||||| ||||| || |||||| ||||||||| ||||||||||  | ||||| ||||| | |||||  ||| |||    
T  2736266 ctcttgttgaaaaatattatcccatggattttagtgaccaggagaagattaatttgccatttcatcttaaacatttcctttttgaggctcgtgaatcatc 2736365  T
Q  100 aactttgaaaaatttatcaactattcaagaattatgctaatgtttagctgc 150  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  2736366 aactttgaaaaatttatcaactattcaagaattatgctcatgtttggctgc 2736416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 40925312 - 40925462
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    |||||||||||||||||||||| |||||||| ||||| || |||||| ||||||||| ||||||||||  | ||||| ||||| | |||||  ||| |||    
T  40925312 ctcttgttgaaaaatattatcccatggattttagtgaccaggagaagattaatttgccatttcatcttaaacatttcctttttgaggctcgtgaatcatc 40925411  T
Q  100 aactttgaaaaatttatcaactattcaagaattatgctaatgtttagctgc 150  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  40925412 aactttgaaaaatttatcaactattcaagaattatgctcatgtttggctgc 40925462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 22126931 - 22126781
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    |||||||||||||||||||||| |||||||| |||||||| |||||| ||||||||| |||||||||   | ||||| ||||| | |||||  ||| |||    
T  22126931 ctcttgttgaaaaatattatcccatggattttagtgatcaggagaagattaatttgccatttcatctaaaacatttcctttttgaggctcgtgaatcatc 22126832  T
Q  100 aactttgaaaaatttatcaactattcaagaattatgctaatgtttagctgc 150  Q
    |||||||||||||||||||||||||||||||||||| | |||||| |||||    
T  22126831 aactttgaaaaatttatcaactattcaagaattatgttcatgtttggctgc 22126781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 8425404 - 8425341
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgatttcatctcactcg 242  Q
    ||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||  |||||||    
T  8425404 attgaaagggaaattagtgcatctattagttccgagtcaattattgatgatttcaagtcactcg 8425341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 19972109 - 19972046
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgatttcatctcactcg 242  Q
    ||||| |||||||||| ||||| ||||| ||| ||||||||||||||||||||||  |||||||    
T  19972109 attgaaagggaaattagtgcatctattaattccgagtcaattattgatgatttcaagtcactcg 19972046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 54788867 - 54788921
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    ||||| || ||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  54788867 attgaaagtgaaattagtgcatgtattagttccgagtcaattattgatgatttca 54788921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 14195393 - 14195349
Alignment:
Q  189 aaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||||    
T  14195393 aaattagtgcatgtattagttccgagtcaattattgatgatttca 14195349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 22509943 - 22509909
Alignment:
Q  103 tttgaaaaatttatcaactattcaagaattatgct 137  Q
    |||||| ||||||||||||||||||||||||||||    
T  22509943 tttgaagaatttatcaactattcaagaattatgct 22509909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 14835315 - 14835352
Alignment:
Q  194 aatgcatatattagttctgagtcaattattgatgattt 231  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  14835315 aatgcatttattagttccgagtcaattattgatgattt 14835352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 39621799 - 39621840
Alignment:
Q  103 tttgaaaaatttatcaactattcaagaattatgctaatgttt 144  Q
    |||||| ||||||||||||||| |||||||||||| ||||||    
T  39621799 tttgaagaatttatcaactatttaagaattatgctcatgttt 39621840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 22509717 - 22509669
Alignment:
Q  185 agggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    ||||| |||| ||||  |||||||||||||||| |||||||||||||||    
T  22509717 agggatattagtgcaagtattagttctgagtcagttattgatgatttca 22509669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 22270771 - 22270621
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    |||||||||||||||||||||| |||||||| ||||| || |||||| ||||||||| ||||||||||  | ||||| ||||| | |||||  ||| |||    
T  22270771 ctcttgttgaaaaatattatcccatggattttagtgaccaggagaagattaatttgccatttcatcttaaacatttcctttttgaggctcgtgaatcatc 22270672  T
Q  100 aactttgaaaaatttatcaactattcaagaattatgctaatgtttagctgc 150  Q
    |||||||||||||||||||||||||||||||||||||| | |||| |||||    
T  22270671 aactttgaaaaatttatcaactattcaagaattatgctcaagtttggctgc 22270621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 19677032 - 19676980
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgattt 231  Q
    ||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  19677032 attgaaagggaaattagtgcatgtattagttccgagtcaattattgatgattt 19676980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 35635154 - 35635106
Alignment:
Q  185 agggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  35635154 agggaaattagtgcatgtattagttctgagtcaattatcgatgatttca 35635106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 38395215 - 38395167
Alignment:
Q  185 agggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  38395215 agggaaattagtgcatgtattagttctgagtcaattatcgatgatttca 38395167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 23121114 - 23121066
Alignment:
Q  185 agggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    |||||||||| ||||  |||||||||||||||| |||||||||||||||    
T  23121114 agggaaattagtgcaagtattagttctgagtcagttattgatgatttca 23121066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 14009350 - 14009384
Alignment:
Q  103 tttgaaaaatttatcaactattcaagaattatgct 137  Q
    |||||| ||||||||||||||||||||||||||||    
T  14009350 tttgaagaatttatcaactattcaagaattatgct 14009384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 23121340 - 23121306
Alignment:
Q  103 tttgaaaaatttatcaactattcaagaattatgct 137  Q
    |||||| ||||||||||||||||||||||||||||    
T  23121340 tttgaagaatttatcaactattcaagaattatgct 23121306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 28313163 - 28313197
Alignment:
Q  103 tttgaaaaatttatcaactattcaagaattatgct 137  Q
    |||||| ||||||||||||||||||||||||||||    
T  28313163 tttgaagaatttatcaactattcaagaattatgct 28313197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 14009576 - 14009624
Alignment:
Q  185 agggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    |||||||||| ||||  |||||||| ||||||| |||||||||||||||    
T  14009576 agggaaattagtgcaagtattagttatgagtcagttattgatgatttca 14009624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 19663217 - 19663153
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgatttcatctcactcga 243  Q
    ||||| || ||||||| ||||| ||||||||   |||||||||||||||||||||  ||||||||    
T  19663217 attgaaagtgaaattagtgcatgtattagtttcaagtcaattattgatgatttcaaatcactcga 19663153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 5088363 - 5088547
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    |||||||| ||||||||||||| |||||||| |||||||| |||||| |||| |||| |||| |||||||| ||||| ||||| | | |||| ||| |||    
T  5088363 ctcttgttcaaaaatattatcccatggattttagtgatcatgagaagattaaattgccatttgatcttcgacatttcctttttgacgttcgctaatcatc 5088462  T
Q  100 aactttgaaaaatttatcaactattcaagaattatgctaatgtttagctgccaatggacaaaccaaaaaatacttattgattgata 185  Q
    |||||| || ||||||| ||||||||||| ||| |||| |||||| |||||| ||||||||| |||| ||||||| ||||||||||    
T  5088463 aactttcaagaatttataaactattcaagcattgtgctcatgtttggctgcc-atggacaaaacaaagaatacttcttgattgata 5088547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 41317895 - 41317979
Alignment:
Q  103 tttgaaaaatttatcaactattcaagaattatgctaatgtttagctgccaatggacaaaccaaaaaatacttattgattgatagg 187  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  41317895 tttgaaaaatttatcaactattcaagaattatgctcatgtttagctaccaatagacaaaccaaaaaatacttcttgattgatagg 41317979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 41318120 - 41318184
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgatttcatctcactcga 243  Q
    ||||| |||||||||| |||| |||||| ||| ||||||||||||||||||||||  ||||||||    
T  41318120 attgaaagggaaattagtgcacatattacttccgagtcaattattgatgatttcaagtcactcga 41318184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 9844908 - 9844854
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    ||||| ||| |||||| ||||| ||||||||  ||||||||||||||||||||||    
T  9844908 attgaaaggaaaattactgcatgtattagtttcgagtcaattattgatgatttca 9844854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 43525106 - 43525140
Alignment:
Q  103 tttgaaaaatttatcaactattcaagaattatgct 137  Q
    |||||| ||||||||||||||||||||||||||||    
T  43525106 tttgaagaatttatcaactattcaagaattatgct 43525140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 17738163 - 17738119
Alignment:
Q  189 aaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    |||||| ||||| ||||||||| ||||||||| ||||||||||||    
T  17738163 aaattagtgcatgtattagttccgagtcaattgttgatgatttca 17738119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 43525332 - 43525380
Alignment:
Q  185 agggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    ||||||| || ||||  |||||||||||||||| |||||||||||||||    
T  43525332 agggaaactagtgcaagtattagttctgagtcagttattgatgatttca 43525380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 41966 - 42110
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    |||||||||||||||||||||| |||||||| ||||| || || ||  ||||||||| ||||||||||| | ||||| ||||| | |||||  ||| |||    
T  41966 ctcttgttgaaaaatattatcccatggattttagtgaccaggataatattaatttgccatttcatcttcaacatttcctttttgaggctcgtgaatcatc 42065  T
Q  100 aactttgaaaaatttatcaactattcaagaattatgctaatgttt 144  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  42066 aactttgaaaaatttatcaactattcaagaattatgctcatgttt 42110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 33363359 - 33363502
Alignment:
Q  2 tcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatca 100  Q
    ||||||||||||||||||||| |||||||| |||||||| |||||| ||||||||| |||||||||   | ||||| ||||| | |||||  ||| ||||    
T  33363359 tcttgttgaaaaatattatcccatggattttagtgatcaggagaagattaatttgccatttcatctaaaacatttcctttttgaggctcgtgaatcatca 33363458  T
Q  101 actttgaaaaatttatcaactattcaagaattatgctaatgttt 144  Q
    ||||||||||||||||||||||||||||||||||| | ||||||    
T  33363459 actttgaaaaatttatcaactattcaagaattatgttcatgttt 33363502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 42809295 - 42809445
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    |||||||||||||||||||||| |||||||| |||||||| |||||| ||||||||  |||||||||   | ||||| ||||| | |||||  ||| |||    
T  42809295 ctcttgttgaaaaatattatcccatggattttagtgatcaggagaagattaatttgtcatttcatctaacacatttcctttttgaggctcgtgaatcatc 42809394  T
Q  100 aactttgaaaaatttatcaactattcaagaattatgctaatgtttagctgc 150  Q
    |||||||||||||||||||||||||||||||||| ||| |||||| |||||    
T  42809395 aactttgaaaaatttatcaactattcaagaattaggctcatgtttggctgc 42809445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 32381920 - 32382071
Alignment:
Q  32 agtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatcaactttgaaaaatttatcaactattcaagaat 131  Q
    ||||||||||||||  ||||||| | ||||||| ||||| || || ||||| ||||||| |||| | |||||||||| |||||||||||||||||| |||    
T  32381920 agtgatcaagagaaaattaattttccatttcattttcgacatctcctttttgatgctcgtcaatcaacaactttgaagaatttatcaactattcaataat 32382019  T
Q  132 tatgctaatgtttagctgccaatggacaaaccaaaaaatacttattgattgatagg 187  Q
    |||||| |||||    ||||||||||||| |||||||||| || ||| ||||||||    
T  32382020 tatgctcatgtt----tgccaatggacaacccaaaaaatatttcttgcttgatagg 32382071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 32435875 - 32436026
Alignment:
Q  32 agtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatcaactttgaaaaatttatcaactattcaagaat 131  Q
    ||||||||||||||  ||||||| | ||||||| ||||| || || ||||| ||||||| |||| | |||||||||| |||||||||||||||||| |||    
T  32435875 agtgatcaagagaaaattaattttccatttcattttcgacatctcctttttgatgctcgtcaatcaacaactttgaagaatttatcaactattcaataat 32435974  T
Q  132 tatgctaatgtttagctgccaatggacaaaccaaaaaatacttattgattgatagg 187  Q
    |||||| |||||    ||||||||||||| |||||||||| || ||| ||||||||    
T  32435975 tatgctcatgtt----tgccaatggacaacccaaaaaatatttcttgcttgatagg 32436026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 18427343 - 18427505
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||  |||||||            |||| ||||| ||||| || ||| ||||| |||    
T  18427343 ctcttgttgaaaaatattatcccatggattttagtgatcaagagaaaattaattt------------tcgacatttcctttttgatactcaccaatcatc 18427430  T
Q  100 aactttgaaaaatttatcaactattcaagaattatgctaatgtttagctgccaatggacaaaccaaaaaatactt 174  Q
    |||||| || |||||||||| |||||||||||| |||| |||||||||| ||| | |||||||||||||||||||    
T  18427431 aactttaaagaatttatcaattattcaagaattgtgctcatgtttagctaccactagacaaaccaaaaaatactt 18427505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 42466580 - 42466449
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    ||||||| |||||||||||||| |||||||||| ||| || |||||| ||| || || |||||| |||| | ||||| || || ||||||| |||   ||    
T  42466580 ctcttgtagaaaaatattatcccatggatttca-tgagcaggagaagattacttcgcgatttcaacttcaacatttcattattgatgctcgtcaagattc 42466482  T
Q  100 aactttgaaaaatttatcaactattcaagaatt 132  Q
    |||||||||||  ||||||||||| ||||||||    
T  42466481 aactttgaaaagcttatcaactatccaagaatt 42466449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 20098980 - 20099026
Alignment:
Q  187 ggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    |||||||| |||| |||||||||| ||||||||||||||||||||||    
T  20098980 ggaaattagtgcaaatattagttccgagtcaattattgatgatttca 20099026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 12868443 - 12868395
Alignment:
Q  185 agggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    |||||||||| ||||  |||||||||||||||| |||||||||||||||    
T  12868443 agggaaattagtgcaagtattagttctgagtcagttattgatgatttca 12868395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 18427646 - 18427698
Alignment:
Q  179 attgatagggaaattaatgcatatattagttctgagtcaattattgatgattt 231  Q
    ||||| ||| ||||||||| ||  |||||||||||||||||||||||||||||    
T  18427646 attgaaaggtaaattaatgtatgcattagttctgagtcaattattgatgattt 18427698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 12868669 - 12868635
Alignment:
Q  103 tttgaaaaatttatcaactattcaagaattatgct 137  Q
    |||||| ||||||||||||||||||||||||||||    
T  12868669 tttgaagaatttatcaactattcaagaattatgct 12868635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 33236658 - 33236605
Alignment:
Q  180 ttgatagggaaattaatgcatatattagttctgagtcaattattgatgatttca 233  Q
    |||| |||||||||| || || ||||||||| ||||| ||||||||||||||||    
T  33236658 ttgaaagggaaattagtgtatgtattagttccgagtctattattgatgatttca 33236605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 33363715 - 33363755
Alignment:
Q  202 tattagttctgagtcaattattgatgatttcatctcactcg 242  Q
    |||||||||||| |||||||||||||||||||  |||||||    
T  33363715 tattagttctgaatcaattattgatgatttcaagtcactcg 33363755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 42479143 - 42479011
Alignment:
Q  1 ctcttgttgaaaaatattatcc-atggatttcagtgatcaagagaagtttaatttgctatttcatcttcgatatttcttttttcatgctcgccaattatc 99  Q
    ||||||| |||||||||||||| ||||||||||  || || |||||| ||||||| | || ||| ||||   ||||| || || ||||||| |||   ||    
T  42479143 ctcttgtagaaaaatattatcccatggatttcaacgagcaggagaagcttaatttacgatgtcaacttcagcatttcattattgatgctcgtcaagattc 42479044  T
Q  100 aactttgaaaaatttatcaactattcaagaatt 132  Q
    ||  ||||| |||||||||||||| ||||||||    
T  42479043 aaaattgaagaatttatcaactatccaagaatt 42479011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 7900 - 7860
Alignment:
Q  97 atcaactttgaaaaatttatcaactattcaagaattatgct 137  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  7900 atcaagtttgaagaatttatcaactattcaagaattatgct 7860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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