View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8369_high_3 (Length: 904)

Name: NF8369_high_3
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8369_high_3
NF8369_high_3
[»] chr1 (12 HSPs)
chr1 (339-888)||(28663015-28663564)
chr1 (11-216)||(28663700-28663903)
chr1 (361-532)||(28605914-28606085)
chr1 (610-808)||(28654693-28654891)
chr1 (610-808)||(28635412-28635610)
chr1 (361-533)||(28635823-28635995)
chr1 (11-158)||(28636186-28636333)
chr1 (610-808)||(28605244-28605442)
chr1 (11-153)||(28606406-28606548)
chr1 (10-156)||(28656682-28656828)
chr1 (361-533)||(28656330-28656502)
chr1 (212-251)||(26830606-26830645)
[»] chr6 (2 HSPs)
chr6 (216-251)||(426520-426555)
chr6 (218-251)||(4118341-4118374)


Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 339 - 888
Target Start/End: Complemental strand, 28663564 - 28663015
Alignment:
Q  339 gtaaatgttagaatgtacagtagtacctaaaagagcaacagttgcttcaacgtctacaccaatggcttgaaaacgagaaagcactaaggatattgagtca 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28663564 gtaaatgttagaatgtacagtagtacctaaaagagcaacagttgcttcaacgtctacaccaatggcttgaaaacgagaaagcactaaggatatggagtca 28663465  T
Q  439 ttatgatttggaatgaattcttctaccattgttacatggctttctttgccatcccttcgtccagtcttcatttcaaattttggacctcccaactatacaa 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28663464 ttatgatttggaatgaattcttctaccattgttacatggctttctttgccatcccttcgtcctgtcttcatttcaaattttggacctcccaactatacaa 28663365  T
Q  539 atgcaccaacataaaaatcttttaattttaagtctcaatttttatctgggatttctaatgtgcgactcttaacataccatggcaattccgtctctagcgg 638  Q
    ||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28663364 atgcaacagcataaaaatcttttaattttaagtctcaatttttatgtgggatttctaatgtgcgactcttaacataccatggcaattccgtctctagcgg 28663265  T
Q  639 aaagagcaacaatgtcggcacatgatactgtcaagggacattctttctccacagcagctttgatggtttttacatacttgaagtttcgcatcccggaact 738  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28663264 aaagagcaacaatgtcggcacatgatactgtcaagggacattctttctccacagcagctttgatggtttttacatacttgaagtttcgcatcccggaact 28663165  T
Q  739 tctctctgatgtctgttccgatactacatcgcccaccgattctaaaagcagggatgcatcgcatgactgcgtggaaacccacatatatatcattatatta 838  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28663164 tctctctgatgtctgttccgatactacatcgcccaccgattctaaaagcagggatgcatcacatgactgcgtggaaacccacatatatatcattatatta 28663065  T
Q  839 actgcttctttaatccaaaaatgataacttcctgcgattatatttatact 888  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  28663064 attgcttctttaatccaaaaatgataacttgctgcgattatatttatact 28663015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 28663903 - 28663700
Alignment:
Q  11 tttggtgttgggcatctaagttttaagtaggcaacatatgtggggtctagctttgggtccactgtggggtatagtctgtggaccaaattcatgcaatgta 110  Q
    |||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||    
T  28663903 tttggtgttgggcatctaagttttagataggcagcatatgtggggtctagctttgggtccaccgtggggtatagtctatggaccatattcatgcaatgta 28663804  T
Q  111 ctcttcccactgagtgtcctcctgattgaatcaaagtgaccaattaattatgtttatgtttgacttttgaagtaaatgttatataatgtatatgaagcac 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  28663803 ctcttcccactgagtgtcctcctgattgaatcaaagtgaccaattaattatgtttatgtttgacttttgaagtaaatgt--tataatgtatatgaagcac 28663706  T
Q  211 ggacac 216  Q
     |||||    
T  28663705 agacac 28663700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 361 - 532
Target Start/End: Complemental strand, 28606085 - 28605914
Alignment:
Q  361 gtacctaaaagagcaacagttgcttcaacgtctacaccaatggcttgaaaacgagaaagcactaaggatattgagtcattatgatttggaatgaattctt 460  Q
    ||||||||||||||||| || ||||||||||| |  |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||    
T  28606085 gtacctaaaagagcaaccgtggcttcaacgtcaatgccaatggcttgaaaactagaaagcactgaggatattgagtcattatgatttggaatgaattgtt 28605986  T
Q  461 ctaccattgttacatggctttctttgccatcccttcgtccagtcttcatttcaaattttggacctcccaact 532  Q
    | ||||   |||||| ||||||||||| |||| |||||||| ||||||||||||| ||||||||||||||||    
T  28605985 ccaccacctttacatagctttctttgctatcctttcgtccactcttcatttcaaagtttggacctcccaact 28605914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 610 - 808
Target Start/End: Complemental strand, 28654891 - 28654693
Alignment:
Q  610 acataccatggcaattccgtctctagcggaaagagcaacaatgtcggcacatgatactgtcaagggacattctttctccacagcagctttgatggttttt 709  Q
    ||||||||| ||||| ||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||     
T  28654891 acataccattgcaataccgtctctagcagaaagagcaacaatatcagcacatgacactgtcaagggacattctttctcaacagcagctttgatggtgttc 28654792  T
Q  710 acatacttgaagtttcgcatcccggaacttctctctgatgtctgttccgatactacatcgcccaccgattctaaaagcagggatgcatcgcatgactgc 808  Q
    ||||||||||| |||| ||||||  |||||||  | |||||||| |||||||| ||| ||| |  || | ||||||| | |||||||||||||||||||    
T  28654791 acatacttgaaatttctcatcccaaaacttcttaccgatgtctgctccgataccacaccgcgccacgttgctaaaagaaaggatgcatcgcatgactgc 28654693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 610 - 808
Target Start/End: Complemental strand, 28635610 - 28635412
Alignment:
Q  610 acataccatggcaattccgtctctagcggaaagagcaacaatgtcggcacatgatactgtcaagggacattctttctccacagcagctttgatggttttt 709  Q
    ||||||||| ||||| ||||||||||| || ||||| |||||||| || ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||     
T  28635610 acataccattgcaataccgtctctagcagatagagcgacaatgtcagcgcatgacactgtcaagggacattctttctcgacagctgctttgatggtattc 28635511  T
Q  710 acatacttgaagtttcgcatcccggaacttctctctgatgtctgttccgatactacatcgcccaccgattctaaaagcagggatgcatcgcatgactgc 808  Q
    ||||||||||| |||| ||||||  |||||||| | |||||||| |||||||| ||| |   ||||| | ||||||||||||||||||| |||||||||    
T  28635510 acatacttgaaatttctcatcccaaaacttctcaccgatgtctgctccgataccacaccatgcaccgttgctaaaagcagggatgcatcacatgactgc 28635412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 361 - 533
Target Start/End: Complemental strand, 28635995 - 28635823
Alignment:
Q  361 gtacctaaaagagcaacagttgcttcaacgtctacaccaatggcttgaaaacgagaaagcactaaggatattgagtcattatgatttggaatgaattctt 460  Q
    ||||||||||||||||| || ||||||||||| ||||| || |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||    
T  28635995 gtacctaaaagagcaaccgtggcttcaacgtcaacaccgatagcttgaaaacgagacaacactaaggatattgagtcattatggtttggaatgaattctt 28635896  T
Q  461 ctaccattgttacatggctttctttgccatcccttcgtccagtcttcatttcaaattttggacctcccaacta 533  Q
    | ||||   || |||  |||||||||| |||||||| |||| ||||||||||||  |||||||| ||||||||    
T  28635895 ccaccacatttgcataactttctttgctatcccttcttccactcttcatttcaatgtttggaccacccaacta 28635823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 28636333 - 28636186
Alignment:
Q  11 tttggtgttgggcatctaagttttaagtaggcaacatatgtggggtctagctttgggtccactgtggggtatagtctgtggaccaaattcatgcaatgta 110  Q
    |||||||||||||| ||| |||||| ||||| | ||| ||| || |||| | |||| |||||||||||||||||||||||||||||||||||||||||||    
T  28636333 tttggtgttgggcacctacgttttaggtaggtagcatgtgtaggatctaacgttggatccactgtggggtatagtctgtggaccaaattcatgcaatgta 28636234  T
Q  111 ctcttcccactgagtgtcctcctgattgaatcaaagtgaccaattaat 158  Q
    ||||||| ||||||||| ||||||||| |||||||||||||| |||||    
T  28636233 ctcttccaactgagtgtgctcctgatttaatcaaagtgaccagttaat 28636186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 610 - 808
Target Start/End: Complemental strand, 28605442 - 28605244
Alignment:
Q  610 acataccatggcaattccgtctctagcggaaagagcaacaatgtcggcacatgatactgtcaagggacattctttctccacagcagctttgatggttttt 709  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||| || ||||| |||||||| ||||||||||| || | |||||||||||||||  |     
T  28605442 acataccctggcaataccgtctctagcagaaagagcaacaatgtcagcgcatgacactgtcaaaggacattctttttcaagagcagctttgatggtgctc 28605343  T
Q  710 acatacttgaagtttcgcatcccggaacttctctctgatgtctgttccgatactacatcgcccaccgattctaaaagcagggatgcatcgcatgactgc 808  Q
    |||||||||||||||| ||||||  |||||||||| | |||||| |||||||| ||  ||  |||||  || ||||||||||||||||| |||||||||    
T  28605342 acatacttgaagtttctcatcccaaaacttctctccgctgtctgctccgataccacgccgtgcaccgtctccaaaagcagggatgcatcacatgactgc 28605244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 11 - 153
Target Start/End: Complemental strand, 28606548 - 28606406
Alignment:
Q  11 tttggtgttgggcatctaagttttaagtaggcaacatatgtggggtctagctttgggtccactgtggggtatagtctgtggaccaaattcatgcaatgta 110  Q
    |||||||||||||| ||| |||||| ||||||| ||| ||| || |||| | |||| |||||||||||||||||||||||||||||||||||||||||||    
T  28606548 tttggtgttgggcacctacgttttaggtaggcagcatgtgtaggatctaacgttggatccactgtggggtatagtctgtggaccaaattcatgcaatgta 28606449  T
Q  111 ctcttcccactgagtgtcctcctgattgaatcaaagtgaccaa 153  Q
    ||||||| || |||||| ||||| |||||||||||||||||||    
T  28606448 ctcttccaaccgagtgtgctcctaattgaatcaaagtgaccaa 28606406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 28656828 - 28656682
Alignment:
Q  10 gtttggtgttgggcatctaagttttaagtaggcaacatatgtggggtctagctttgggtccactgtggggtatagtctgtggaccaaattcatgcaatgt 109  Q
    ||||||| |||| |||||| |||||| |||| |||||||||| ||||||||| ||||||||||| | ||||||||||||||||||| ||| ||||| |||    
T  28656828 gtttggttttggacatctacgttttaggtagacaacatatgtagggtctagcgttgggtccactatagggtatagtctgtggaccatatttatgcagtgt 28656729  T
Q  110 actcttcccactgagtgtcctcctgattgaatcaaagtgaccaatta 156  Q
    |||||||||||||| ||| ||||||||| ||||| ||||||||||||    
T  28656728 actcttcccactgaatgtgctcctgattcaatcatagtgaccaatta 28656682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 361 - 533
Target Start/End: Complemental strand, 28656502 - 28656330
Alignment:
Q  361 gtacctaaaagagcaacagttgcttcaacgtctacaccaatggcttgaaaacgagaaagcactaaggatattgagtcattatgatttggaatgaattctt 460  Q
    ||||||||||||||||| || |||||||| || |||||||| ||||| |||||||  ||||||||||| || ||| |||||||  |||||||| ||||||    
T  28656502 gtacctaaaagagcaaccgtggcttcaacatcaacaccaatagcttggaaacgagtgagcactaaggacatggaggcattatggcttggaatggattctt 28656403  T
Q  461 ctaccattgttacatggctttctttgccatcccttcgtccagtcttcatttcaaattttggacctcccaacta 533  Q
    | ||||  ||||||| ||||||||||| |||||||| |||| ||||||||||||  ||||||  |||||||||    
T  28656402 ccaccaccgttacatagctttctttgctatcccttcttccactcttcatttcaatgtttggaattcccaacta 28656330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 26830645 - 26830606
Alignment:
Q  212 gacacgacacttgtaatcacatttaattatgtgatttttt 251  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  26830645 gacacgacacttataattacatttaattatgtgatttttt 26830606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 426520 - 426555
Alignment:
Q  216 cgacacttgtaatcacatttaattatgtgatttttt 251  Q
    ||||||||||||| ||||||||||||||||||||||    
T  426520 cgacacttgtaattacatttaattatgtgatttttt 426555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 4118341 - 4118374
Alignment:
Q  218 acacttgtaatcacatttaattatgtgatttttt 251  Q
    ||||||||||| ||||||||||||||||||||||    
T  4118341 acacttgtaattacatttaattatgtgatttttt 4118374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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