View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8369_high_30 (Length: 207)
Name: NF8369_high_30
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 51999957 - 51999786
Alignment:
| Q |
22 |
tcgttgacatcaaatatcttgggtgtattctcaatcttttgatgcacatactcttgaagcatggagtttaccattgtatgatcttctggccatgtcattg |
121 |
Q |
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| T |
51999957 |
tcgttgacatcaaatatcttgggtgtattctcaatcttttgatgcacatactcttgaagcatggagtttaccattgtatgatcttctggccatgtcattg |
51999858 |
T |
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| Q |
122 |
gtcccgtattattaccaccatcatcaccatcatacacaatcaaacaagctgtcgcaccggccttcatagtat |
193 |
Q |
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| T |
51999857 |
gtcccgtattattaccaccatcatcaccatcatacacaatcaaacaagctgttgcaccggccttcatagtat |
51999786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 44260248 - 44260150
Alignment:
| Q |
25 |
ttgacatcaaatatcttgggtgtattctcaatcttttgatgcacatactcttgaagcatggagtttaccattgtatgatcttctggccatgtcattggt |
123 |
Q |
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| T |
44260248 |
ttgacatcaaatatcttaggagttttctcaatcttttgattttgatactcttgaagcaaggagtttacacttataaggtcttctggccatgtcattggt |
44260150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 171
Target Start/End: Complemental strand, 15977872 - 15977758
Alignment:
| Q |
51 |
ctcaatcttttgatgcacatactcttgaagcatggagtttaccattgtatgatcttctggccatgtcattggtcccgtattattaccaccatcatcacca |
150 |
Q |
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| T |
15977872 |
ctcaatcttcttatgctcatattcttgaagcatggagtttacaatattagggttttctggccatgtcattggtcccacattattac------catcttca |
15977779 |
T |
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| Q |
151 |
tcatacacaatcaaacaagct |
171 |
Q |
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| T |
15977778 |
tcatacacaatcaaacaagct |
15977758 |
T |
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