View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8369_high_5 (Length: 470)

Name: NF8369_high_5
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8369_high_5
NF8369_high_5
[»] chr3 (6 HSPs)
chr3 (244-452)||(37130331-37130535)
chr3 (275-404)||(37121808-37121933)
chr3 (186-242)||(26555477-26555533)
chr3 (191-240)||(2125267-2125316)
chr3 (192-240)||(28211740-28211788)
chr3 (198-242)||(22418554-22418598)
[»] chr1 (7 HSPs)
chr1 (185-241)||(18431702-18431758)
chr1 (185-242)||(22788449-22788506)
chr1 (185-240)||(6154642-6154697)
chr1 (191-240)||(7786797-7786846)
chr1 (11-44)||(18431525-18431558)
chr1 (198-242)||(33403425-33403469)
chr1 (198-242)||(37187912-37187956)
[»] chr2 (2 HSPs)
chr2 (185-242)||(16916433-16916490)
chr2 (11-44)||(16916258-16916291)
[»] chr6 (3 HSPs)
chr6 (185-240)||(5014160-5014215)
chr6 (185-242)||(16692963-16693020)
chr6 (11-44)||(5013972-5014005)
[»] chr5 (3 HSPs)
chr5 (185-240)||(424823-424878)
chr5 (187-240)||(18113827-18113880)
chr5 (192-240)||(25634440-25634488)
[»] chr8 (2 HSPs)
chr8 (192-242)||(28535194-28535244)
chr8 (188-220)||(11464465-11464497)
[»] chr7 (3 HSPs)
chr7 (200-237)||(46437312-46437349)
chr7 (191-240)||(38663006-38663055)
chr7 (198-242)||(28998021-28998065)
[»] chr4 (1 HSPs)
chr4 (188-242)||(8903208-8903262)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 3e-80; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 244 - 452
Target Start/End: Complemental strand, 37130535 - 37130331
Alignment:
Q  244 atgtccgtgcctgtggtggcacaacattattaataaaggagataacatatgtggttcaaatgcttcgctactcgcggttttcaatagaaggttggacatt 343  Q
    |||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37130535 atgtccatgtctgtggtggtacaacatcattaataaaggagataacatatgtggttcaaatgcttcgctactcgcggttttcaatagaaggttggacatt 37130436  T
Q  344 cgaggcgaaagaaaactttcattttccctcacgaacaaaagtgaaaatcaagaaaggaaccattttcttagtgagggttcctttcttcttttttgaacga 443  Q
     |||||    ||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  37130435 tgaggc----gaaaactttcattttccctcacgtacaaaagtgaaaatcaataaagaaaccatttttttagcgagggttcctttcttcttttttgaacga 37130340  T
Q  444 caacctttt 452  Q
    |||||||||    
T  37130339 caacctttt 37130331  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 404
Target Start/End: Complemental strand, 37121933 - 37121808
Alignment:
Q  275 aataaaggagataacatatgtggttcaaatgcttcgctactcgcggttttcaatagaaggttggacattcgaggcgaaagaaaactttcattttccctca 374  Q
    ||||||||||||||||| ||||||||| | | | || |||||  ||||||||| ||||||| ||  ||| ||||     |||||||||||||||| ||||    
T  37121933 aataaaggagataacatttgtggttcacacgttacgttactcatggttttcaaaagaaggtagggaatttgagg----tgaaaactttcattttcactca 37121838  T
Q  375 cgaacaaaagtgaaaatcaagaaaggaacc 404  Q
    |  |||||||||||||||||||||||||||    
T  37121837 catacaaaagtgaaaatcaagaaaggaacc 37121808  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 26555533 - 26555477
Alignment:
Q  186 taggctagaatatggtgtggcagctgccacaccatgtttcactctacatccgcccct 242  Q
    ||||| ||||| |||||||||||||||||||||||||||||| || |||||||||||    
T  26555533 taggcaagaatctggtgtggcagctgccacaccatgtttcacactccatccgcccct 26555477  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 2125316 - 2125267
Alignment:
Q  191 tagaatatggtgtggcagctgccacaccatgtttcactctacatccgccc 240  Q
    |||||| |||||||||||||||||||||||||||||| |||  |||||||    
T  2125316 tagaatctggtgtggcagctgccacaccatgtttcacactaactccgccc 2125267  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 28211740 - 28211788
Alignment:
Q  192 agaatatggtgtggcagctgccacaccatgtttcactctacatccgccc 240  Q
    ||||| |||||||||||||||||||||||||||||| |||  |||||||    
T  28211740 agaatctggtgtggcagctgccacaccatgtttcacactaactccgccc 28211788  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 22418598 - 22418554
Alignment:
Q  198 tggtgtggcagctgccacaccatgtttcactctacatccgcccct 242  Q
    |||||||||| |||||||||||||||||||  || ||||||||||    
T  22418598 tggtgtggcaactgccacaccatgtttcacagtagatccgcccct 22418554  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 18431702 - 18431758
Alignment:
Q  185 ttaggctagaatatggtgtggcagctgccacaccatgtttcactctacatccgcccc 241  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18431702 ttaggctagaatctggtgtggcagctgccacaccatgtttcactctacatccgcccc 18431758  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 22788449 - 22788506
Alignment:
Q  185 ttaggctagaatatggtgtggcagctgccacaccatgtttcactctacatccgcccct 242  Q
    |||||| ||||| ||||||||||| |||||||||||||||||| || |||||||||||    
T  22788449 ttaggcaagaatctggtgtggcagttgccacaccatgtttcacactccatccgcccct 22788506  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 6154642 - 6154697
Alignment:
Q  185 ttaggctagaatatggtgtggcagctgccacaccatgtttcactctacatccgccc 240  Q
    |||||||||||| |||||| ||||||| ||||||||||||||   |||||||||||    
T  6154642 ttaggctagaatctggtgttgcagctgtcacaccatgtttcaacgtacatccgccc 6154697  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 7786797 - 7786846
Alignment:
Q  191 tagaatatggtgtggcagctgccacaccatgtttcactctacatccgccc 240  Q
    |||||| ||||||| |||||||||||||||||||||| |||  |||||||    
T  7786797 tagaatctggtgtgacagctgccacaccatgtttcacactaactccgccc 7786846  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 18431525 - 18431558
Alignment:
Q  11 gtgagaagaaagacgactgtgaattgtgatttgt 44  Q
    |||||||||||||||| |||||||||||||||||    
T  18431525 gtgagaagaaagacgattgtgaattgtgatttgt 18431558  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 33403469 - 33403425
Alignment:
Q  198 tggtgtggcagctgccacaccatgtttcactctacatccgcccct 242  Q
    |||||||||| |||||||||||||||||| | || ||||||||||    
T  33403469 tggtgtggcaactgccacaccatgtttcagtgtagatccgcccct 33403425  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 37187956 - 37187912
Alignment:
Q  198 tggtgtggcagctgccacaccatgtttcactctacatccgcccct 242  Q
    |||||||||| |||||||||||||||||||  || ||||||||||    
T  37187956 tggtgtggcaactgccacaccatgtttcacagtagatccgcccct 37187912  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 16916433 - 16916490
Alignment:
Q  185 ttaggctagaatatggtgtggcagctgccacaccatgtttcactctacatccgcccct 242  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  16916433 ttaggctagaatctggtgtggcagctgacacaccatgtttcactctacatccgcccct 16916490  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 16916258 - 16916291
Alignment:
Q  11 gtgagaagaaagacgactgtgaattgtgatttgt 44  Q
    |||||||||||||||| |||||||||||||||||    
T  16916258 gtgagaagaaagacgattgtgaattgtgatttgt 16916291  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 5014160 - 5014215
Alignment:
Q  185 ttaggctagaatatggtgtggcagctgccacaccatgtttcactctacatccgccc 240  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5014160 ttaggttagaatctggtgtggcagctgccacaccatgtttcactctacatccgccc 5014215  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 16693020 - 16692963
Alignment:
Q  185 ttaggctagaatatggtgtggcagctgccacaccatgtttcactctacatccgcccct 242  Q
    |||||| ||||| ||||||||||||| |||||||||||||||| ||  ||||||||||    
T  16693020 ttaggcaagaatctggtgtggcagctaccacaccatgtttcacactcaatccgcccct 16692963  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 5013972 - 5014005
Alignment:
Q  11 gtgagaagaaagacgactgtgaattgtgatttgt 44  Q
    |||||||||||||||| |||||||||||||||||    
T  5013972 gtgagaagaaagacgattgtgaattgtgatttgt 5014005  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 424823 - 424878
Alignment:
Q  185 ttaggctagaatatggtgtggcagctgccacaccatgtttcactctacatccgccc 240  Q
    |||||||||||| ||||||||||||||||||||||||||||| | |||||||||||    
T  424823 ttaggctagaatctggtgtggcagctgccacaccatgtttcaatgtacatccgccc 424878  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 18113827 - 18113880
Alignment:
Q  187 aggctagaatatggtgtggcagctgccacaccatgtttcactctacatccgccc 240  Q
    |||||||||| |||||||||| |||||||||||||||||| | |||||||||||    
T  18113827 aggctagaatctggtgtggcaactgccacaccatgtttcaatgtacatccgccc 18113880  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 25634440 - 25634488
Alignment:
Q  192 agaatatggtgtggcagctgccacaccatgtttcactctacatccgccc 240  Q
    ||||| |||||||||||||||||||||||||||||| |||  |||||||    
T  25634440 agaatttggtgtggcagctgccacaccatgtttcacactaactccgccc 25634488  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 28535244 - 28535194
Alignment:
Q  192 agaatatggtgtggcagctgccacaccatgtttcactctacatccgcccct 242  Q
    ||||| |||||||||||||||||||||||||||||| || |||||||||||    
T  28535244 agaatctggtgtggcagctgccacaccatgtttcacactccatccgcccct 28535194  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 11464465 - 11464497
Alignment:
Q  188 ggctagaatatggtgtggcagctgccacaccat 220  Q
    ||||||||| |||||||||||||||||||||||    
T  11464465 ggctagaatctggtgtggcagctgccacaccat 11464497  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 46437349 - 46437312
Alignment:
Q  200 gtgtggcagctgccacaccatgtttcactctacatccg 237  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46437349 gtgtggcagctgccacaccatgtttcactctacatccg 46437312  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 38663055 - 38663006
Alignment:
Q  191 tagaatatggtgtggcagctgccacaccatgtttcactctacatccgccc 240  Q
    |||||| |||||||||||||||||||||||||||||| |||  |||||||    
T  38663055 tagaatctggtgtggcagctgccacaccatgtttcacactaactccgccc 38663006  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 28998065 - 28998021
Alignment:
Q  198 tggtgtggcagctgccacaccatgtttcactctacatccgcccct 242  Q
    |||||||||| |||||||||||||||||||  || ||||||||||    
T  28998065 tggtgtggcaactgccacaccatgtttcacagtagatccgcccct 28998021  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 8903262 - 8903208
Alignment:
Q  188 ggctagaatatggtgtggcagctgccacaccatgtttcactctacatccgcccct 242  Q
    ||||||||| |||||||| ||||||||||||||| | || | |||||||||||||    
T  8903262 ggctagaatctggtgtggtagctgccacaccatgctacaatgtacatccgcccct 8903208  T

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