View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8369_low_1 (Length: 1022)
Name: NF8369_low_1
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 735; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 735; E-Value: 0
Query Start/End: Original strand, 235 - 1009
Target Start/End: Original strand, 38325284 - 38326058
Alignment:
| Q |
235 |
gcaaattctaattggctaggtttaagaacaatgacggtaaccaatacaatatacttcaaagtaatcaatgactaaaacaaatacaaatttaagaaaattc |
334 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38325284 |
gcaaattctaattggctaggtttaagaacaatgactgtaaccaatacaatatacttcaaagtaatcaatgactaaaacaaatacagatttaagaaaattc |
38325383 |
T |
|
| Q |
335 |
aatgaataagtagctatagtatcctctgttgctctcttcctatgtgattgagttttatttctatccaagttattttcatacaattatgtttgaattcact |
434 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
38325384 |
aatgaataagtagctatagtatcctctgttgctctcttcctatgtgattgagttttatttcaatcgaagttattttcatacaattatgtttgaattcact |
38325483 |
T |
|
| Q |
435 |
aggttaaactgtattcaattttttggcatgtaatccctttgattcaatttcaaaacgatttttctttggcgtatacctgtttaaaagttttatttatatt |
534 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38325484 |
aggttaaactgtattcaattttttggcatgtaatccctttgattcaatttcaaaatgatttttctttggcgtatacctgtttaaaagttgtatttatatt |
38325583 |
T |
|
| Q |
535 |
cgtcaggaatgtaatcagtgctcaaagcaaacgggaaaatgctgccctgctgtccgaacaatgagcattcataaataaataaaaaatctttgcgtgtgct |
634 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38325584 |
cgtcaggaatgtaatcagtgctcaaagcaaacgggaaaatgctgccctgctgtccgaacaatgagcattcataaataaataaaaaatctttgcgtgtgct |
38325683 |
T |
|
| Q |
635 |
gatttctgcatttgggcgctaagctgtggcgatcatcaatgagttctttcaattgagctgagcatattggccggctggtcgttgttgctgccgagcactc |
734 |
Q |
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| T |
38325684 |
gatttctgcatttgggcgctaagctgtggcgatcatcaatgagttctttcaattgagctgagcatattagccggctggtcgttgttgctgccgagcactc |
38325783 |
T |
|
| Q |
735 |
attattatgttcgaaattcctgctcttgtgcacacaaaaaacttatgatgttgggtggaggctctcataagtggttttattcgcaacagttagagagaga |
834 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38325784 |
attattatgttcgaaattcctgctcttgtgcacacaaaaaatttatgatgttgggtggaggctctcataagtggttttattcgcaacagttagagagaga |
38325883 |
T |
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| Q |
835 |
ttttatcaattgatcataaattcctgcttctattgctcctactatcataacactggatgctatttttgctatagtgcatgaagatatggttggtctagac |
934 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38325884 |
ttttatcaattgatcataaattcctgcttctattgctcctactatcataacactggatgctatttttgctatagtgcatgaagatatggttggtctaaac |
38325983 |
T |
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| Q |
935 |
tttctaaggaatattgcaccttcactttggcaactgaaagtgtttggagagagatagatacagctttgaatgtga |
1009 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38325984 |
tttctaaggaatattgcaccttcactttggcaactgaaagtgtttggagagagatagatacaactttgaatgtga |
38326058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 38324307 - 38324479
Alignment:
| Q |
1 |
gaattttgagtgcccaacattgttggacacgccttcagtttaaaatatcggtgttacaagtgttaagaagtgcactcaaatgcagccttggctcccctct |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
38324307 |
gaattttgagtgcccaacattgttggacacaccttcagtttaaaatatcggtgttacaagtgtaaataagtgcactcaaatgcagccttggctcccctct |
38324406 |
T |
|
| Q |
101 |
gagagagggaaactttgcaggcatcagattaatcacacacttcttctgtatcaatgtaagtttctttgctgcc |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38324407 |
gagagagggaaactttgcaggcatcagattaatcacacacttcttctgtatcaatgtaagtttctttgctgcc |
38324479 |
T |
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