View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8369_low_10 (Length: 432)
Name: NF8369_low_10
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 413
Target Start/End: Complemental strand, 42026170 - 42025767
Alignment:
| Q |
8 |
gagcagaacctgtggccatcctaaacattcctcttcctccgaccaccgcgagttccctcgtcggttccctcaccggattcctcgaaagaacactaaagga |
107 |
Q |
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| T |
42026170 |
gagcaaaaccagtggccatcctaaactttcctcttcctccgaccaccgcgagttccctcgtcggttccctcaccggattcctcgaaagaacactaaagga |
42026071 |
T |
|
| Q |
108 |
gcttccatttaattcaccagaggtgaaagcataatcaacatacatagtaagtgtcacatcttcactttggctagagatgccacataaagatcttgtgcat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |
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| T |
42026070 |
gcttccatttaattcaccagaggtgaaagcataatcaacatacatagtaagtgtcacatcttcactctggctaga--tgccacataaagaccttgtgcat |
42025973 |
T |
|
| Q |
208 |
ttccaaccacatttgatgtttcttcaggaccttccctaagaggattgtcaatggcataaacagtaccaaacaatgaatgtttcttaggaatgtcacttat |
307 |
Q |
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| T |
42025972 |
ttccaactacatttgatgtttcttcaggaccttccctaagaggattgtcaatggcataaacagtaccaaacaatgaatgtttcttaggaatgtcacttgt |
42025873 |
T |
|
| Q |
308 |
ttggttagcacgtgccacaacaactgcacttgggttattgcctgtgtgaatatcaaagtagtagaaatgaaggtgagttaccttatttggtagctcatgt |
407 |
Q |
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| T |
42025872 |
ttggttagcacgtgccacaacaactgcacttgggttattgcctgtgtgaatatcaaagtagtagaaatgaaggtgagttaccttatttggtagctcatgt |
42025773 |
T |
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| Q |
408 |
ggaact |
413 |
Q |
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| T |
42025772 |
ggaact |
42025767 |
T |
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Back To:
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Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 344 - 413
Target Start/End: Complemental strand, 1253045 - 1252976
Alignment:
| Q |
344 |
attgcctgtgtgaatatcaaagtagtagaaatgaaggtgagttaccttatttggtagctcatgtggaact |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1253045 |
attgcctgtgtgaatatcaaagtagtagaaatgaaggtgagttcccttatttggtagctcatgtggaact |
1252976 |
T |
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