View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8369_low_12 (Length: 422)
Name: NF8369_low_12
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 43767238 - 43767635
Alignment:
| Q |
19 |
aacagttcatacatggatt-attgatatggatattttattttattataagtggtccaaacatgacaagcaaaagaaaatgatggtacattgtaattttaa |
117 |
Q |
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| T |
43767238 |
aacagttcatacatggatttattgatatggatattttattttattataagtggtccaaacatgacaagcaaaagaaaatgatggtacattgtaattttaa |
43767337 |
T |
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| Q |
118 |
atgatatttcctatatttgaaaatttaattctaatgttgtaaatgttttagtggacnnnnnnnngattaagttgattgtagtagaattatatgtttttga |
217 |
Q |
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| T |
43767338 |
atgatatttcctatatttgaaaatttaattctaatgttgtaaatgttttagtggacaaaaaaaagattaagttgattgtagtagaattatatgtttttga |
43767437 |
T |
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| Q |
218 |
ttatagtatggtttcttaacacatgcattaatctttctttttagaagtgaaggttgttgtcaacttttaagctcctttgcttatctatttcacagaaata |
317 |
Q |
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| T |
43767438 |
ttatagtatggtttcttaacacatgcattaatctttctttttagaagtgaaggttgttgtcaacttttaagctcctttgcttatctatttcacataaata |
43767537 |
T |
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| Q |
318 |
tagataaagacacataaaatataaaaagttcaatgtcatttaaactttagtaacacttggaactttcctctcctccatgtcttgtctaattcatctca |
415 |
Q |
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| T |
43767538 |
tagataaagacacataaaatataaaaagttcaatgtcatttaaactttagtaacacttggaactttcctctcctccatgtcttgtctaattcatctca |
43767635 |
T |
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