View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8369_low_13 (Length: 414)
Name: NF8369_low_13
Description: NF8369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8369_low_13 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 149 - 414
Target Start/End: Complemental strand, 40514506 - 40514241
Alignment:
| Q |
149 |
aataaacgtgcattccatttcttttagtttttcaaatcttggtttgatactattccatattttaaggggagtatgacacaacatttataagaaaatgaat |
248 |
Q |
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| T |
40514506 |
aataaacgtgcattccatttcttttagtttttcaaatcttggtttgatactattccatattttaaggggagtatgacataacatttataagaaaatgaat |
40514407 |
T |
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| Q |
249 |
caatgaatgaatatacttctgcattacctatcttttgcttttcaatagcctccataggtgtggaggataagttgcttgcagcagagggaaatgctttgga |
348 |
Q |
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| T |
40514406 |
caatgaatgaatatacttctgcattacctatcttttgcttttcaatagcctccataggtgtggaggataagttgcttgcagcagagggaaatgctttgga |
40514307 |
T |
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| Q |
349 |
atatttctcactttaattggtgctccttccattttttgttggtgtatatatgtaagaaacttattt |
414 |
Q |
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| T |
40514306 |
atatttctcactttaattggtgctccttccattttttgttggtgtatatatgtaagaaacttattt |
40514241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 40514685 - 40514603
Alignment:
| Q |
4 |
atcaataaatcatatgtccaatatcaaagtcacattgaaaaacaaataactggcatatatactttctctatatagtaataacc |
86 |
Q |
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| T |
40514685 |
atcaataaatcatatgtccaatatcaaagtcacattgaaaaacaaataactggcatatatactttctctatatagtaataacc |
40514603 |
T |
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